Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq172 118 1e-21
>seq172
Length=386049
Score = 118 bits (130), Expect = 1e-21
Identities = 266/395 (67%), Gaps = 16/395 (4%)
Strand=Plus/Plus
Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985
|||||| || || || ||||| || ||||||| || ||||| || |||||| | ||
Sbjct 25019 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGA-GCAC 25077
Query 92986 AGGTA-GAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044
||| | |||| || |||||||| |||| |||||| |||| || || | | | |||
Sbjct 25078 AGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTT 25137
Query 93045 TTACTC--TACTAT-TTGG----TGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097
||| | || |||| ||||| || || | ||| | ||| |||
Sbjct 25138 GGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGA-------ACAAGAGGCAGGCA 25190
Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157
|||||||| || | ||||||||| || || || | ||| ||| ||| || | ||||||
Sbjct 25191 AAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGC 25250
Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217
| ||| || || ||||| | ||| ||||| || || || ||| || || || |||||
Sbjct 25251 ATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCC 25310
Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277
|| || || ||||| || || | ||| | || || | | | ||| |||||||
Sbjct 25311 TCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTCCTTATCTTGGATCCAT 25370
Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312
||| ||||| ||||| || ||||| || || ||
Sbjct 25371 CTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGG 25405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556857263933920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |