Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq172 118 1e-21 >seq172 Length=386049 Score = 118 bits (130), Expect = 1e-21 Identities = 266/395 (67%), Gaps = 16/395 (4%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 |||||| || || || ||||| || ||||||| || ||||| || |||||| | || Sbjct 25019 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGA-GCAC 25077 Query 92986 AGGTA-GAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 ||| | |||| || |||||||| |||| |||||| |||| || || | | | ||| Sbjct 25078 AGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTT 25137 Query 93045 TTACTC--TACTAT-TTGG----TGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 ||| | || |||| ||||| || || | ||| | ||| ||| Sbjct 25138 GGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGA-------ACAAGAGGCAGGCA 25190 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 |||||||| || | ||||||||| || || || | ||| ||| ||| || | |||||| Sbjct 25191 AAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGC 25250 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | ||| || || ||||| | ||| ||||| || || || ||| || || || ||||| Sbjct 25251 ATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCC 25310 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277 || || || ||||| || || | ||| | || || | | | ||| ||||||| Sbjct 25311 TCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTCCTTATCTTGGATCCAT 25370 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 ||| ||||| ||||| || ||||| || || || Sbjct 25371 CTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGG 25405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857263933920