Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq172 219 8e-52 seq487 196 9e-45 >seq172 Length=386049 Score = 219 bits (242), Expect = 8e-52 Identities = 365/516 (71%), Gaps = 11/516 (2%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 |||||||||||||||||||| |||||||| | | |||||| | | ||| | || Sbjct 25405 CCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGATAAGGACTCTACA 25346 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 |||| || | || || |||||| |||| || ||||| ||||||||||| || | ||| Sbjct 25345 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 25286 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGA 42811 ||||| || |||||| | ||| || | ||| |||||| || || |||||||| ||||| Sbjct 25285 GCCTCTATATTCTGGTTGAAGAAGCGTG-GTCTGATGCCAGGTCTTACCTTCTCCAACGA 25227 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 |||||| | | ||||| || || || | ||||||||||||||| ||||||| ||| Sbjct 25226 GCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTC---CCA 25170 Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931 | | | || || ||| | |||| | | | || || ||||| || ||||| Sbjct 25169 CTTGAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGAT 25110 Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACC 42990 |||| | |||||| | || | | || ||| ||| | || ||||||||||| | Sbjct 25109 CGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTG-CTCTTCTCGGCATGAACGCTGCTT 25051 Query 42991 TCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTC-AG 43048 | ||| |||| ||||| ||| |||||| || | ||| || | | ||| | || Sbjct 25050 TGATGAAGCAA-TACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAG 24992 Query 43049 CCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108 | | ||||| | | ||| |||||||| |||||||||||||| | | || || Sbjct 24991 AAGTAT-TACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCCCTTGCCGGAAA 24933 Query 43109 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||||||| ||||||||||| |||||||||||||| Sbjct 24932 GACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCA 24897 >seq487 Length=114140 Score = 196 bits (216), Expect = 9e-45 Identities = 608/922 (66%), Gaps = 28/922 (3%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT--GTACTGGACAATCTCGGTGCAGA 244745 |||| ||| || || || ||||| || || || ||| | || ||||| ||||||| Sbjct 16445 GCCAAGTTACAAACAGCGACCTCGTC--AGGTGCACAGTATTCAACGATCTCTGTGCAGA 16388 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 | || || |||||| || |||| || ||||| ||| |||||| || |||| Sbjct 16387 GATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTACGGTTGCAAGCATCCT 16328 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 ||||||||||||| || ||||||||| || || |||||| | || ||| || | Sbjct 16327 TGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCT 16268 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | ||||||| ||| ||||| ||||||| ||||||||||| ||| || |||| Sbjct 16267 TCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCCT 16208 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 | || ||| || | || || | || ||||||||| |||||||| || ||| Sbjct 16207 CAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCC 16148 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || | || || | || ||||||||| || || ||||| || || | ||||| Sbjct 16147 ATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGA 16088 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | | | || ||| || |||||| | || || | || ||||||| Sbjct 16087 GATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGA 16028 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || ||||||| ||||| | ||||| |||| || || || ||||| || || |||| Sbjct 16027 CATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCT 15968 Query 245166 GGTCCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGA 245223 ||| || ||| ||| | | | |||||| | || || |||| || || ||||| || Sbjct 15967 GGT-CAACAT-ATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGA 15910 Query 245224 GTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT--- 245280 || ||||| ||||| ||||| || || || | | || | ||| ||||||| Sbjct 15909 GTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCAC---GGATTCTG-TGGACATTCA 15854 Query 245281 -GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 || | || || || | ||||||||| | ||| || |||||| || || || | Sbjct 15853 GACCGATGCCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATAC 15794 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG-GGG 245398 | || || |||||| |||||||| || || ||||| || || || | | ||||| || Sbjct 15793 CGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAG-TTGTGCTTGTGGT 15735 Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCG 245458 ||| | | || || || || ||||| |||||||| ||| || | || | Sbjct 15734 GTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGACATCAAATTG 15675 Query 245459 TACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAG 245517 || |||| || | || || | || ||||| || || || ||| ||||||| Sbjct 15674 TATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCCACAGC-CACTCTCATGAT 15616 Query 245518 GGTGTGCTG-GGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCT 245573 |||| || || ||| ||| || |||||| | | ||| | ||| || | || Sbjct 15615 CATGTGTTGTGGACGT-TCGGCAATCTTGCCCTCGAGAC---GGAGAAGGTATGATCTCT 15560 Query 245574 CGAGCGTCTTGAACCCAAAGTA 245595 | || |||||||| |||||||| Sbjct 15559 CAAGAGTCTTGAATCCAAAGTA 15538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944333203446080