Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq344 131 4e-25
seq172 116 9e-21
>seq344
Length=396322
Score = 131 bits (144), Expect = 4e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || ||||||| || || || ||||| ||||| || |
Sbjct 110100 CCACCACGAAGGCGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGAC 110159
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || || || || || || || ||||| ||||| || || | ||| || ||||
Sbjct 110160 AAGGTACGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGG 110219
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || ||||| || |||| ||| ||||| ||
Sbjct 110220 ATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACC 110279
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 110280 TCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 110326
Score = 102 bits (112), Expect = 2e-16
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || || |||| || ||||| || || || || || ||||| |||||
Sbjct 110364 TCCTTCTGGATGTTGTAATCGGATAGGGTGCGGCCATCCTCCAACTGCTTTCCAGCGAAA 110423
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || ||||| || || || || ||||| |||| || || ||
Sbjct 110424 ATGAGTCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTG 110483
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | |||| ||||| |||||||| ||||| ||||| || || ||||||||||||
Sbjct 110484 TCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACG 110543
Query 288463 A 288463
|
Sbjct 110544 A 110544
Score = 96.9 bits (106), Expect = 8e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || |||||| | ||||| || || || || || || || || ||
Sbjct 109908 TCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAA 109967
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || |||||| || || ||||||||||| || | || |||||
Sbjct 109968 ATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATCTTGGACTTGACGTTG 110027
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || ||| || ||||| || || || ||||| || |||| ||||||||||
Sbjct 110028 TCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACG 110087
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 110088 AAGATCTGCAT 110098
>seq172
Length=386049
Score = 116 bits (128), Expect = 9e-21
Identities = 160/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176
|||||||| | ||| ||| | || ||| || | |||| ||||| || | | | ||||
Sbjct 25104 AAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGATGA 25045
Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGT 269236
| ||||| || || ||||| ||||||||| | || || |||||| | ||||| |
Sbjct 25044 AGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGTATT 24985
Query 269237 ACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACT 269296
|||| || || || |||| ||| ||||| || || || | |||||||| ||||
Sbjct 24984 ACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCCCTTGCCGGAAAGACCAACT 24925
Query 269297 TCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340
||||||| ||||||||| |||||| ||| ||||||| |||
Sbjct 24924 TCTTCGAGAAGCGTGTCGCCGACTACCAAAAAGCTGGTGTTATG 24881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179646721924424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |