Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq487 269 3e-67 seq172 150 2e-31 >seq487 Length=114140 Score = 269 bits (298), Expect = 3e-67 Identities = 1120/1747 (64%), Gaps = 49/1747 (3%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 |||||||||||||| || ||||| || ||| ||||||| || | ||||| | Sbjct 17327 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 17268 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | |||| | |||||| | |||| || |||||| |||||| || ||||||||| Sbjct 17267 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 17208 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 113773 |||||||| || ||||| | || | | | | || | || ||||| ||||| Sbjct 17207 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACG-CTGGGAGATCTCCCAGACAGTC 17151 Query 113774 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCC 113833 |||| || ||| ||||| | || || | || |||||||||||| || || | Sbjct 17150 TTGTAAAGAGCCTTGATATCGGCAGGAATGTTAGGGACATTTTGGATGGAACCTCCATCG 17091 Query 113834 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 113893 || || | | |||||| | | |||||||||||| || | ||||||| || Sbjct 17090 GCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAAC 17031 Query 113894 AG---ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950 | | | ||| || || || ||||| || ||| |||| ||||||||| Sbjct 17030 AACCAAGGGTTA---ACGACTTGGAATTCACCAGCCAGGACACGTCGGGAGTAGATATTG 16974 Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010 | ||||||||||| || ||||| ||| || | |||||| ||| ||| || ||| Sbjct 16973 GATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGC 16914 Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070 || || || | ||| | |||||||| ||||| | | | | || ||| ||| | || | Sbjct 16913 ATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTG 16854 Query 114071 TCCCAGTCGTAGTTGAGCTTT--GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 114128 ||||||| | || | | || | || | ||||||||| | ||||| |||| Sbjct 16853 GCCCAGTCCCAAA-GATCGGTAGGTGTAACCTT-CCACATATCGTATTGGAGCTCTCCTT 16796 Query 114129 GGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGG-AG 114187 | || ||||| || || || |||||||||| | || | || || | || || Sbjct 16795 GTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCAACAG 16736 Query 114188 CTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCC 114247 | || ||| | ||||| || || ||||| || || | || | |||||| Sbjct 16735 ATGAAGTCAAGG-CAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGGTGTTTGGCC 16677 Query 114248 TCGTCGGAATCAAACGCGAGTCGGCACAAAATA--AATACATCCGCGAGACCTTGGACAC 114305 ||| || || || | ||| || | | || || ||||| |||||||| ||||||| Sbjct 16676 TCGGGAGACTCGAATGGGAGACG--AAGAGCTAGGAARACATCGGCGAGACCCTGGACAC 16619 Query 114306 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAA 114362 | | |||| || | || | | ||| ||| || || ||| || || || Sbjct 16618 CAACAGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGGTAGT 16562 Query 114363 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 114422 | || | ||||| | | | || | || || |||||||| || || ||||||| Sbjct 16561 AGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCT 16502 Query 114423 TTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 114482 | | | || | |||| | | || ||||| || | || || || | || |||| Sbjct 16501 TCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCA 16442 Query 114483 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTG 114542 ||||| |||| | ||| || || ||| || | || || || || | ||| | Sbjct 16441 AGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACGATCTCTGTGCAGAGATTGG 16382 Query 114543 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAA 114602 | || ||||| || | |||||| ||||| ||| ||| || ||||||||||| | Sbjct 16381 AGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTACGGTTGCAAGCATCCTTGTAGA 16322 Query 114603 GCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCG 114661 ||||| | || | || ||||| ||||| | || ||| || | | ||| | | || | | Sbjct 16321 GCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGG 16262 Query 114662 GCTGGCACAGTGGCGTTGGCTCGCCCCT--CCT----CCTCGTACTTTGTGTAGAGGGCT 114715 || | ||| ||| || |||| ||| |||||||||| ||| || || Sbjct 16261 CCTTGA----TGGTCTTG---CGACCCTTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCC 16209 Query 114716 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 114775 ||||| || ||||| | || | || || || || | ||||| | || | | Sbjct 16208 TCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTC 16149 Query 114776 CATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAG 114835 ||| |||| || ||||||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct 16148 CATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAG 16089 Query 114836 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 114895 ||||| ||| |||| |||| || | || || || || | || | || || | | Sbjct 16088 AGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAG 16029 Query 114896 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCC 114952 | ||| |||||||| || || ||||| | ||||| | || || | ||| || Sbjct 16028 ACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCC 15969 Query 114953 TGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGAT 115012 |||| ||||| || |||||| || || || || ||||| |||| ||||| | || Sbjct 15968 TGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAG 15909 Query 115013 TGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCA 115072 | || ||||| || ||| || | |||| | || |||| | || ||| Sbjct 15908 TTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCG 15849 Query 115073 ATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCG 115132 || || || || ||| ||||| || || | ||||| | |||| || |||||| Sbjct 15848 ATGCCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCG 15789 Query 115133 ATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCA 115192 || ||| |||| | |||| | |||||| || | ||||| |||||| || Sbjct 15788 ATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCG 15729 Query 115193 GCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGG 115250 ||| ||||||||||| | |||||| || | | |||| ||||||| || ||| | Sbjct 15728 GCGGCAAAGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATCAAATTGTATG 15671 Query 115251 TCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGT 115310 |||| | | ||| || |||||||||||||| | | || | ||| | ||||| Sbjct 15670 TCTCGATAGCACTCTCAATATCATCCCCGTGAATACCCACAGCCACTCTCATGATCATGT 15611 Query 115311 ATTGGGG 115317 ||| || Sbjct 15610 GTTGTGG 15604 >seq172 Length=386049 Score = 150 bits (166), Expect = 2e-31 Identities = 306/450 (68%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| | || ||||||||||||||||| ||||| ||| | | | ||| |||||||| Sbjct 24899 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCAT 24958 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 || || |||||||| || || || || | | ||| | | ||| ||| Sbjct 24959 GAAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG--GAGCAGA 25016 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 ||||| | |||| |||||||||| | |||| ||| |||||| |||| || | Sbjct 25017 CGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCA 25076 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || || || || | |||| | | ||| || || || || || | | | | Sbjct 25077 CAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCT 25136 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCACGGCAAACTC 126054 || | | | | | || | || | ||| ||| | | || |||||| || Sbjct 25137 TGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGAACAAGAGGCA-GGCAAAGTC 25195 Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114 ||||||||| ||||||||||||||||| || || |||||| || |||||||| || Sbjct 25196 GGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAG 25255 Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| ||||||||||||||||| || | |||||||| ||||||||||| ||||| || Sbjct 25256 ACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAAC 25315 Query 126175 ACACGCGAACGCAAAGAGACGCTCAGCAAA 126204 | || || |||| |||||||| ||| || Sbjct 25316 AGCGGCAAAGGCAACGAGACGCTGAGCGAA 25345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597349806804640