Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq344 98.7 1e-15
>seq344
Length=396322
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || || ||||||| || || || | || || | |||||| ||||||||
Sbjct 110135 CTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATCCTCCAACTGCTTTCCAGCGAA 110194
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||||| ||||||||||| ||| | | |||||||||| ||| ||| |||| |
Sbjct 110195 AATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTTGACTTGACGTT 110254
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | || || ||||| || |||| ||||| || || || || || ||||| ||
Sbjct 110255 ATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTGAC 110314
Query 42197 AAAGATTTGCAT 42208
|| || |||||
Sbjct 110315 GAAAATCTGCAT 110326
Score = 96.9 bits (106), Expect = 4e-15
Identities = 164/235 (70%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034
|||| ||||||| | | ||||| ||||| ||| | || |||||| || || |||||
Sbjct 109865 TTATTGACCTCCACGAAGACGCAGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTA 109924
Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094
|| || ||| || | || || | |||||||||||| || || |||| |||||||||
Sbjct 109925 GTCGCTCAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTC 109984
Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCG 42153
|| ||| | | |||||| ||| ||| || |||| ||| | | | ||||| ||
Sbjct 109985 GGGTGGGATACCCTCCTTATCCTGGATCTTGGACTTGA-CGTTGTCGATTGTGTCAGACG 110043
Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || || || | || || || || || || | ||||| || ||||| |||||
Sbjct 110044 ACTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 110098
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || |||||||| | || || || | || || | |||||| ||||||||
Sbjct 110363 CTCCTTCTGGATGTTGTAATCGGATAGGGTGCGGCCATCCTCCAACTGCTTTCCAGCGAA 110422
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||||| ||||||||||| || | || ||||||||| ||| || |||| |
Sbjct 110423 AATGAGTCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATT 110482
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | || ||| ||||| || |||| |||||||| ||||| || || ||||| ||
Sbjct 110483 GTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 110542
Score = 86.0 bits (94), Expect = 7e-12
Identities = 119/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || |||||||| | ||||| || |||| || |||||||| ||||||||
Sbjct 110656 TCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAG 110715
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| | ||||||||||||| || | || ||||||||| ||| || |||| |
Sbjct 110716 ATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTG 110775
Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184
| | ||||| || || || |||| |||||||| ||||| ||
Sbjct 110776 TCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 110822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543209350598720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |