Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq344 102 8e-17
seq487 91.5 1e-13
seq116 91.5 1e-13
>seq344
Length=396322
Score = 102 bits (112), Expect = 8e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| || | | || || ||||||| || ||||| || || ||||||||||| |
Sbjct 110619 ACCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGA 110678
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| ||||| |||| || ||||||||||| || | || | |||||||||||||| ||
Sbjct 110679 GAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGG 110738
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || ||||| || || ||| ||| || | || || | || ||
Sbjct 110739 AATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGAC 110798
Query 64396 TTCTACAGTTACGGTCTTGCCGGT 64419
|| | ||| | ||||||||||||
Sbjct 110799 CTCGAGAGTGATGGTCTTGCCGGT 110822
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||||| || || || || || ||||| ||||| | | ||| || | ||
Sbjct 110114 AAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATC 110173
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| | |||||| || || ||||||| | |||||||||||| || || || || || ||
Sbjct 110174 CTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTC 110233
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || ||| ||| || || | |||||| | || || || | || | ||
Sbjct 110234 CTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGT 110293
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| ||||||| ||| || |||||||| |||||
Sbjct 110294 CTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 110326
Score = 95.1 bits (104), Expect = 1e-14
Identities = 133/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || ||||||||||| | | |||||| | || || | |||||| ||
Sbjct 110358 GTAGACTCCTTCTGGATGTTGTAATCGGATAGGGTGCGGCCATCCTCCAACTGCTTTCCA 110417
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| ||||||| | ||||||||||||||| || || || || ||||| || || |||
Sbjct 110418 GCGAAAATGAGTCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTG 110477
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| || | ||||| | || ||||| | ||| | ||||||||| || | |||
Sbjct 110478 ACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGTAAGAGTC 110537
Query 64427 TTTACGA 64433
|| ||||
Sbjct 110538 TTGACGA 110544
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||| | || || || || || |||||||| || | ||||| | ||
Sbjct 109887 AGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCC 109946
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | |||||| || ||| |||| || | |||||||||||| || || || || || ||
Sbjct 109947 TCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCC 110006
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || || | ||| ||| | || ||||| | ||| | |||
Sbjct 110007 TGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTC 110066
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || |||||||| || ||||| || |||||
Sbjct 110067 TTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 110098
>seq487
Length=114140
Score = 91.5 bits (100), Expect = 1e-13
Identities = 143/202 (71%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 155225 AGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAA-CAAGAAACACGAAGATA 155283
||| ||||| || || | ||| ||||| || |||| ||| | |||||| || ||||| |
Sbjct 15807 AGTATCGTAAATACCGTCGATACTGTCCTCCTTCAT-GTCGATCAAGAAGCATGAAGAGA 15749
Query 155284 ATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGT 155343
||| | ||| || |||||| ||||| | || ||| ||||||||||| |||
Sbjct 15748 GTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGC 15689
Query 155344 TGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCG 155403
||| | || ||||| || ||||| || ||||| ||| ||||| ||||| | |
Sbjct 15688 TGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCCACAG 15629
Query 155404 CCACGCGCATCAGCATGTGTTG 155425
|||| | ||| | |||||||||
Sbjct 15628 CCACTCTCATGATCATGTGTTG 15607
>seq116
Length=121463
Score = 91.5 bits (100), Expect = 1e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| |||||||||| ||||| || || || |||||||| || | || ||| || | |||
Sbjct 20334 AGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCT 20393
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| || ||||||||||| | ||||| || || |||||||| ||||| || || || ||
Sbjct 20394 TCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCC 20453
Query 64352 TGTATTTT 64359
|| || ||
Sbjct 20454 TGGATCTT 20461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499641627255520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |