Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq487 181 1e-40
>seq487
Length=114140
Score = 181 bits (200), Expect = 1e-40
Identities = 594/918 (65%), Gaps = 4/918 (0%)
Strand=Plus/Plus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||||| ||||| ||||| |||| || ||||| ||| | || |||
Sbjct 15529 AACTACCAATACTTTGGATTCAAGACTCTTGAGAGATCATACCTTCTCCGTCTCGAGGGC 15588
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | || |||| || || || || || | ||| | || || | || |||||||| |
Sbjct 15589 AAGATTGCCGAACGTCCACAACACATGATCATGAGAGTGGCTGTGGGTATTCACGGGGAT 15648
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
|| || || || | | | | | || ||| |||| | ||| ||
Sbjct 15649 GATATTGAGAGTGCTATCGAGACATACAATTTGATGTCCAGCAAGTACTTTACACACGCG 15708
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953
| || ||||| || ||| || || || |||| | ||||| || ||| ||||
Sbjct 15709 TCTCCAACCCTCTTTGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATC 15768
Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013
||| | |||| ||| ||| ||| |||| ||| | |||||| ||||| | ||
Sbjct 15769 GAC-ATGAAGGAGGACAGTATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGAT 15827
Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073
||| || | || || || ||||| | | ||||||| | ||||||| || | ||
Sbjct 15828 CTCCAAGAATGCTGGAGGCATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTA 15887
Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133
||| || || || || | ||||||||| | || ||||||||||| || ||||||||
Sbjct 15888 CATTGCTGGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAA 15947
Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193
| | || | || || ||||||||||| | | | ||| |||||||| |||| ||
Sbjct 15948 CACAGCCAGATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCT 16007
Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253
|||||| |||||||| || || | ||| | || || |||||||||||||| || ||
Sbjct 16008 CGAGCCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGA 16067
Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313
| | || | || |||||||||||||| ||| | ||||| || || ||||| ||
Sbjct 16068 GGAAGTTCGCGCTCGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCG 16127
Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373
|| ||||| || | |||| || | || ||||| || || ||||| || | ||
Sbjct 16128 TGTTGAGAAGAATGGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGA 16187
Query 94374 CGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432
|||| || | || ||||| | | || | ||||| | | |||||||
Sbjct 16188 TGTTTACGG-TGACGAATTTGAGGCTCTTTACGAGAAGTACGAGGCAGAAGGCAAGGGTC 16246
Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492
| ||| || | || |||||| ||| | ||| | || | || ||||| |
Sbjct 16247 GCAAGACCATCAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCG 16306
Query 94493 GTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552
| | || | ||| | | |||||| || |||| ||| || ||| || |||| |
Sbjct 16307 GAAACCCTTTCATGCTCTACAAGGATGCTTGCAACCGTAAGAGTAATCAGAAGAACCTTG 16366
Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGA 94612
| ||| ||||| ||||| ||||| ||||| || || || | | || ||||||
Sbjct 16367 GTACCATCCGCAGCTCCAATCTCTGCACAGAGATCGTTGAATACTGTGCACCTGACGAGG 16426
Query 94613 TTGCTGTGTGTAACCTGG 94630
| ||||| |||||| |||
Sbjct 16427 TCGCTGTTTGTAACTTGG 16444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494720058507680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |