Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq487 181 1e-40 >seq487 Length=114140 Score = 181 bits (200), Expect = 1e-40 Identities = 594/918 (65%), Gaps = 4/918 (0%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| ||||| ||||| |||| || ||||| ||| | || ||| Sbjct 15529 AACTACCAATACTTTGGATTCAAGACTCTTGAGAGATCATACCTTCTCCGTCTCGAGGGC 15588 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||| || || || || || | ||| | || || | || |||||||| | Sbjct 15589 AAGATTGCCGAACGTCCACAACACATGATCATGAGAGTGGCTGTGGGTATTCACGGGGAT 15648 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || || || || | | | | | || ||| |||| | ||| || Sbjct 15649 GATATTGAGAGTGCTATCGAGACATACAATTTGATGTCCAGCAAGTACTTTACACACGCG 15708 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | || ||||| || ||| || || || |||| | ||||| || ||| |||| Sbjct 15709 TCTCCAACCCTCTTTGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATC 15768 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| ||| |||| ||| | |||||| ||||| | || Sbjct 15769 GAC-ATGAAGGAGGACAGTATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGAT 15827 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || | || || || ||||| | | ||||||| | ||||||| || | || Sbjct 15828 CTCCAAGAATGCTGGAGGCATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTA 15887 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| || || || || | ||||||||| | || ||||||||||| || |||||||| Sbjct 15888 CATTGCTGGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAA 15947 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || | || || ||||||||||| | | | ||| |||||||| |||| || Sbjct 15948 CACAGCCAGATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCT 16007 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||| |||||||| || || | ||| | || || |||||||||||||| || || Sbjct 16008 CGAGCCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGA 16067 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 | | || | || |||||||||||||| ||| | ||||| || || ||||| || Sbjct 16068 GGAAGTTCGCGCTCGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCG 16127 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || ||||| || | |||| || | || ||||| || || ||||| || | || Sbjct 16128 TGTTGAGAAGAATGGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGA 16187 Query 94374 CGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432 |||| || | || ||||| | | || | ||||| | | ||||||| Sbjct 16188 TGTTTACGG-TGACGAATTTGAGGCTCTTTACGAGAAGTACGAGGCAGAAGGCAAGGGTC 16246 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | ||| || | || |||||| ||| | ||| | || | || ||||| | Sbjct 16247 GCAAGACCATCAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCG 16306 Query 94493 GTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552 | | || | ||| | | |||||| || |||| ||| || ||| || |||| | Sbjct 16307 GAAACCCTTTCATGCTCTACAAGGATGCTTGCAACCGTAAGAGTAATCAGAAGAACCTTG 16366 Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGA 94612 | ||| ||||| ||||| ||||| ||||| || || || | | || |||||| Sbjct 16367 GTACCATCCGCAGCTCCAATCTCTGCACAGAGATCGTTGAATACTGTGCACCTGACGAGG 16426 Query 94613 TTGCTGTGTGTAACCTGG 94630 | ||||| |||||| ||| Sbjct 16427 TCGCTGTTTGTAACTTGG 16444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720058507680