Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq487 102 8e-17
seq344 86.0 6e-12
>seq487
Length=114140
Score = 102 bits (112), Expect = 8e-17
Identities = 553/870 (64%), Gaps = 23/870 (3%)
Strand=Plus/Minus
Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656
|||| ||| |||| ||||| || || ||| || | | | ||| | ||||||||
Sbjct 16454 GCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACGATCTCT 16395
Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716
| |||||| ||| || ||| || | || | |||||| || || || |||||
Sbjct 16394 GTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTACGGTTGCAA 16335
Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAA---C 153773
|| || ||| |||||||| | || ||||||||| ||||| |||| ||| | |
Sbjct 16334 GCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTAC 16275
Query 153774 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCG 153833
| | || | ||| || | || ||| ||| || |||||| ||||
Sbjct 16274 CAAAGC---TTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCG 16218
Query 153834 TACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACAC 153893
|| || |||||| ||||| ||||| || || || ||||| |||| | || |||
Sbjct 16217 TAAAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCAC 16158
Query 153894 ATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGC 153953
||||| | ||| || | | | || || |||||| ||||| || | ||| ||
Sbjct 16157 ATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGA 16098
Query 153954 GCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGC--CCATGTTGCGTTTC--AGATT 154009
||||| | ||| ||||| || || | | ||| | || || | | |||| ||||
Sbjct 16097 GCGTAGAAGAGATCGCGAGC---GCGAACTTCCTCCTTTCCGTGGTTC-TTTCGGAGATC 16042
Query 154010 GAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG 154069
|| | | ||| || |||||||| || || | ||||| || | ||||| ||
Sbjct 16041 AAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCG 15982
Query 154070 CTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTC 154126
||| ||| ||||| || || | | | | |||||||| || || | ||| || |
Sbjct 15981 CTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAAC 15922
Query 154127 CAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTT-GCTGCCGCGGGCGCGCACTTGAT 154185
| ||| | | | | ||||| || | || | ||| | | || | || | | |
Sbjct 15921 AATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGG-CACGGATTCTGT 15863
Query 154186 GCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTC 154244
| || || | || ||||| || | | ||| || || || || ||| || ||
Sbjct 15862 GGACATTCAGACCGATGCCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTG-AGAGTA 15804
Query 154245 CTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGC 154304
||| || |||||||| || || || | | ||| |||||| || ||| | | |||
Sbjct 15803 TCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGT 15744
Query 154305 GGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAAC-AGTTTTTGGCT 154363
| | || || || | ||||||||| ||| |||||| ||||| | || |||
Sbjct 15743 GCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGA- 15685
Query 154364 CATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGAC 154423
||||| ||| || ||||| || || |||||||| |||||||| || | || ||
Sbjct 15684 CATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCCACAGCCAC 15625
Query 154424 GCGCATGAGCATGTGCTGCGGACGTTCGGC 154453
| ||||| |||||| || |||||||||||
Sbjct 15624 TCTCATGATCATGTGTTGTGGACGTTCGGC 15595
>seq344
Length=396322
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||||| || | ||| | | |||||||| || |||||||||||||||
Sbjct 109872 CCTCCACGAAGACGCAGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 109931
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| | || ||||| | | | || || | ||| ||||| || ||
Sbjct 109932 AAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGG 109991
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| || || || ||| || || | | || | ||||| | |||||| ||
Sbjct 109992 ATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACT 110051
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || ||||||| ||| || || || ||||||||
Sbjct 110052 TCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 110098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496259248733760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |