Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq487 102 8e-17 seq344 86.0 6e-12 >seq487 Length=114140 Score = 102 bits (112), Expect = 8e-17 Identities = 553/870 (64%), Gaps = 23/870 (3%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656 |||| ||| |||| ||||| || || ||| || | | | ||| | |||||||| Sbjct 16454 GCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACGATCTCT 16395 Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716 | |||||| ||| || ||| || | || | |||||| || || || ||||| Sbjct 16394 GTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTACGGTTGCAA 16335 Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAA---C 153773 || || ||| |||||||| | || ||||||||| ||||| |||| ||| | | Sbjct 16334 GCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTAC 16275 Query 153774 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCG 153833 | | || | ||| || | || ||| ||| || |||||| |||| Sbjct 16274 CAAAGC---TTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCG 16218 Query 153834 TACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACAC 153893 || || |||||| ||||| ||||| || || || ||||| |||| | || ||| Sbjct 16217 TAAAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCAC 16158 Query 153894 ATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGC 153953 ||||| | ||| || | | | || || |||||| ||||| || | ||| || Sbjct 16157 ATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGA 16098 Query 153954 GCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGC--CCATGTTGCGTTTC--AGATT 154009 ||||| | ||| ||||| || || | | ||| | || || | | |||| |||| Sbjct 16097 GCGTAGAAGAGATCGCGAGC---GCGAACTTCCTCCTTTCCGTGGTTC-TTTCGGAGATC 16042 Query 154010 GAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG 154069 || | | ||| || |||||||| || || | ||||| || | ||||| || Sbjct 16041 AAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCG 15982 Query 154070 CTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTC 154126 ||| ||| ||||| || || | | | | |||||||| || || | ||| || | Sbjct 15981 CTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAAC 15922 Query 154127 CAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTT-GCTGCCGCGGGCGCGCACTTGAT 154185 | ||| | | | | ||||| || | || | ||| | | || | || | | | Sbjct 15921 AATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGG-CACGGATTCTGT 15863 Query 154186 GCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTC 154244 | || || | || ||||| || | | ||| || || || || ||| || || Sbjct 15862 GGACATTCAGACCGATGCCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTG-AGAGTA 15804 Query 154245 CTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGC 154304 ||| || |||||||| || || || | | ||| |||||| || ||| | | ||| Sbjct 15803 TCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGT 15744 Query 154305 GGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAAC-AGTTTTTGGCT 154363 | | || || || | ||||||||| ||| |||||| ||||| | || ||| Sbjct 15743 GCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGA- 15685 Query 154364 CATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGAC 154423 ||||| ||| || ||||| || || |||||||| |||||||| || | || || Sbjct 15684 CATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCCACAGCCAC 15625 Query 154424 GCGCATGAGCATGTGCTGCGGACGTTCGGC 154453 | ||||| |||||| || ||||||||||| Sbjct 15624 TCTCATGATCATGTGTTGTGGACGTTCGGC 15595 >seq344 Length=396322 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || | ||| | | |||||||| || ||||||||||||||| Sbjct 109872 CCTCCACGAAGACGCAGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 109931 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| | || ||||| | | | || || | ||| ||||| || || Sbjct 109932 AAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGG 109991 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || || || ||| || || | | || | ||||| | |||||| || Sbjct 109992 ATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACT 110051 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||| || || || |||||||| Sbjct 110052 TCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 110098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259248733760