Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq344 91.5 1e-13
seq116 84.2 2e-11
>seq344
Length=396322
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| ||||| || || |||||||| ||||| || ||||| || || | || ||
Sbjct 110638 ACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCG 110697
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || || || ||| | ||||| || |||||||| || |||||||| || || |||||
Sbjct 110698 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGG 110757
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|| || |||| || | ||||| ||||||||||| |||||||| | || |||
Sbjct 110758 ATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTG 110817
Query 45312 CCGGT 45316
|||||
Sbjct 110818 CCGGT 110822
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || || ||||| ||||| || |||||| | ||| ||| ||||| ||
Sbjct 110352 TGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGATAGGGTGCGGCCATCCTCCAACTGC 110411
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||| ||| | || | || |||||||| || || ||||| || || ||||| || ||
Sbjct 110412 TTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTC 110471
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
|||| || | ||| ||||| || |||||||||||||| | || ||||| ||
Sbjct 110472 GACTTGACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGTA 110531
Query 45318 AGAGTTTTTAC 45328
||||| || ||
Sbjct 110532 AGAGTCTTGAC 110542
>seq116
Length=121463
Score = 84.2 bits (92), Expect = 2e-11
Identities = 152/219 (69%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||| ||||| | | |||||||| || || || ||||| ||||| || || ||| |
Sbjct 20319 CCTCCACGGAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 20378
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| ||| || | ||| || || ||| | || | ||||| ||||| || |||
Sbjct 20379 AGGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGA 20438
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
||||| || || || || || || |||| || | || | || ||||||||||| ||
Sbjct 20439 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTATCGATAGTATCGGAAGACTCTAC 20497
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331
|| || |||| || ||||| || || |||| | |||
Sbjct 20498 CTCTAGGGTAATTGTCTTGCCCGT--GACTTTTGATAAA 20534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452000329779680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |