Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq344 91.5 1e-13 seq116 84.2 2e-11 >seq344 Length=396322 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || |||||||| ||||| || ||||| || || | || || Sbjct 110638 ACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCG 110697 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | ||||| || |||||||| || |||||||| || || ||||| Sbjct 110698 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGG 110757 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| || | ||||| ||||||||||| |||||||| | || ||| Sbjct 110758 ATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTG 110817 Query 45312 CCGGT 45316 ||||| Sbjct 110818 CCGGT 110822 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || |||||| | ||| ||| ||||| || Sbjct 110352 TGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGATAGGGTGCGGCCATCCTCCAACTGC 110411 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || | || |||||||| || || ||||| || || ||||| || || Sbjct 110412 TTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTC 110471 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||| ||||| || |||||||||||||| | || ||||| || Sbjct 110472 GACTTGACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGTA 110531 Query 45318 AGAGTTTTTAC 45328 ||||| || || Sbjct 110532 AGAGTCTTGAC 110542 >seq116 Length=121463 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| ||||| | | |||||||| || || || ||||| ||||| || || ||| | Sbjct 20319 CCTCCACGGAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 20378 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | ||| || || ||| | || | ||||| ||||| || ||| Sbjct 20379 AGGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGA 20438 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || |||| || | || | || ||||||||||| || Sbjct 20439 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTATCGATAGTATCGGAAGACTCTAC 20497 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 || || |||| || ||||| || || |||| | ||| Sbjct 20498 CTCTAGGGTAATTGTCTTGCCCGT--GACTTTTGATAAA 20534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000329779680