Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq487 239 6e-58
seq172 145 9e-30
>seq487
Length=114140
Score = 239 bits (264), Expect = 6e-58
Identities = 1116/1751 (64%), Gaps = 57/1751 (3%)
Strand=Plus/Minus
Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617
|||||||||||||| || ||||| || ||| ||||||| || | ||||| |
Sbjct 17327 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 17268
Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677
| |||| | |||||| | |||| || |||||| |||||| || |||||||||
Sbjct 17267 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 17208
Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 115734
|| ||||| || ||||| | || | | | | || | || ||||| |||||
Sbjct 17207 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACG-CTGGGAGATCTCCCAGACAGTC 17151
Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794
|||| || ||| ||||| | || || | || ||||||||| || |||| |
Sbjct 17150 TTGTAAAGAGCCTTGATATCGGCAGGAATGTTAGGGACATTTTGGATGGA---ACCTCCA 17094
Query 115795 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851
| | | |||| | | |||||| | | |||||||||||| || | ||||||| |
Sbjct 17093 TCGGCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTC 17034
Query 115852 A----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 115907
| | | | | || || || || ||||| || ||| |||| |||||
Sbjct 17033 AACAACCAAGGG----TTAACGACTTGGAATTCACCAGCCAGGACACGTCGGGAGTAGAT 16978
Query 115908 GTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 115967
|||| ||||||||||| || ||||| ||| || | |||||| || ||| ||
Sbjct 16977 ATTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGT 16918
Query 115968 GGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAG 116027
||||| || || | ||| | ||||| || ||||| | | | || ||| ||| |
Sbjct 16917 TGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAA 16858
Query 116028 GGCGTCCCAGTCGTAGTTGAGCTTT--GTCTCCCCCTCCCACATATCAAACTGGAGGATA 116085
|| | ||||||| | || | | || | || ||| ||||||| | |||||
Sbjct 16857 GGTGGCCCAGTCCCAAA-GATCGGTAGGTGTAACCTTCC-ACATATCGTATTGGAGCTCT 16800
Query 116086 CCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG 116145
||||| || ||||| || || || ||||||| || | || | || || | ||
Sbjct 16799 CCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCA 16740
Query 116146 G-AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204
|| | || ||| | ||||| || || ||||| || || | || | ||
Sbjct 16739 ACAGATGAAGTCAAGG-CAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGGTGTTT 16681
Query 116205 GGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATA--AATACATCCGCGAGACCTTGG 116262
||||||| || || || | |||||| | | || || ||||| |||||||| |||
Sbjct 16680 GGCCTCGGGAGACTCGAATGGGAGACG--AAGAGCTAGGAARACATCGGCGAGACCCTGG 16623
Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGA 116319
||||| | |||| || | || | | ||| ||| || || ||| || ||
Sbjct 16622 ACACCAACAGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGG 16566
Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379
|| | || | ||||| | | | || | || || |||||||| || || |||
Sbjct 16565 TAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGA 16506
Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439
||||| | | || | |||| | | || ||||| || | || || || | ||
Sbjct 16505 AGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAA 16446
Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499
|||| ||||| |||| | ||| || || ||| || | || || || || | |
Sbjct 16445 GCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACGATCTCTGTGCAGAGA 16386
Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559
|| || || ||||| || | |||||| ||||| ||| ||| || |||||||||
Sbjct 16385 TTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTACGGTTGCAAGCATCCTTG 16326
Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATC 116618
|||||||| | || | || ||||| ||||| | || ||| || | | ||| | | ||
Sbjct 16325 TAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTC 16266
Query 116619 GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT--CCT----CCTCGTACTTTGTGTAGAG 116672
| | || | ||| ||| || |||| ||| |||||||||| ||| ||
Sbjct 16265 TGGGCCTTGA----TGGTCTTG---CGACCCTTGCCTTCTGCCTCGTACTTCTCGTAAAG 16213
Query 116673 GGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAG 116732
|||||||| || ||||| | | || | || || || || | || || | ||
Sbjct 16212 AGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAG 16153
Query 116733 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792
| |||| |||| || |||||| |||||||||||||| ||||| ||||| || || |
Sbjct 16152 TGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTA 16093
Query 116793 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 116852
||||||||| ||| |||| |||| || | || || || || | || | || ||
Sbjct 16092 GAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTC 16033
Query 116853 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACC 116909
| || ||| |||||||| || || ||||| | ||||| | || ||| | ||
Sbjct 16032 AAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCC 15973
Query 116910 AGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATC 116969
| |||||| ||||| || || || ||| || || || ||||| |||| ||||| |
Sbjct 15972 ACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTT 15913
Query 116970 AGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCAT 117029
|| | || ||||| || ||| || |||| | || ||||| | ||
Sbjct 15912 GGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAG 15853
Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089
||| || || || || ||| ||||| || || | ||||| | |||| || ||
Sbjct 15852 ACCGATGCCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACC 15793
Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 117149
||||| ||| |||| | |||| | |||||| || | ||||| ||||||
Sbjct 15792 GTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGT 15733
Query 117150 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCG 117207
|| ||| ||||||||||| | |||||| || | | |||| ||||||| || |
Sbjct 15732 GCCGGCGGCAAAGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATCAAATTG 15675
Query 117208 TAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAAC 117267
|| ||||| | || ||| || |||||||||||||| | | || | ||| | |
Sbjct 15674 TATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCCACAGCCACTCTCATGATC 15615
Query 117268 ATGTATTGGGG 117278
|||| ||| ||
Sbjct 15614 ATGTGTTGTGG 15604
>seq172
Length=386049
Score = 145 bits (160), Expect = 9e-30
Identities = 303/444 (68%), Gaps = 8/444 (2%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| |||| ||||||||||||||||| ||||| || | ||| ||| ||||||||
Sbjct 24899 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCAT 24958
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348
|| || |||||||| || || || || | | ||| | | ||| |||
Sbjct 24959 GAAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG--GAGCAGA 25016
Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408
||||| | |||| |||||||||| | |||| ||| |||||| |||| || |
Sbjct 25017 CGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCA 25076
Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468
|| || || || || | |||| | | ||| || || ||||| || | | | |
Sbjct 25077 CAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCT 25136
Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGA-GTTCCACAGCAAACT 127526
|| | | | | | || | || | | |||| ||| | | || ||||| |
Sbjct 25137 TGGACTGCTTGCTTGCTTGGACGATGGT-TCAAGTGGGAGAACAAGAGGCAG-GCAAAGT 25194
Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586
| ||||||||| ||||||||||||||||| || || |||||| ||||||||||| |
Sbjct 25195 CGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCA 25254
Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646
|||| ||||||||||||||||| || | ||||| || ||||||||||| ||||| |
Sbjct 25255 GACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAA 25314
Query 127647 CACACGCGAACGCAAATAGACGCT 127670
|| || || |||| |||||||
Sbjct 25315 CAGCGGCAAAGGCAACGAGACGCT 25338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613503304229280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |