Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq487 239 6e-58 seq172 145 9e-30 >seq487 Length=114140 Score = 239 bits (264), Expect = 6e-58 Identities = 1116/1751 (64%), Gaps = 57/1751 (3%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 |||||||||||||| || ||||| || ||| ||||||| || | ||||| | Sbjct 17327 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 17268 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | |||||| | |||| || |||||| |||||| || ||||||||| Sbjct 17267 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 17208 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 115734 || ||||| || ||||| | || | | | | || | || ||||| ||||| Sbjct 17207 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACG-CTGGGAGATCTCCCAGACAGTC 17151 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 |||| || ||| ||||| | || || | || ||||||||| || |||| | Sbjct 17150 TTGTAAAGAGCCTTGATATCGGCAGGAATGTTAGGGACATTTTGGATGGA---ACCTCCA 17094 Query 115795 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851 | | | |||| | | |||||| | | |||||||||||| || | ||||||| | Sbjct 17093 TCGGCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTC 17034 Query 115852 A----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 115907 | | | | | || || || || ||||| || ||| |||| ||||| Sbjct 17033 AACAACCAAGGG----TTAACGACTTGGAATTCACCAGCCAGGACACGTCGGGAGTAGAT 16978 Query 115908 GTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 115967 |||| ||||||||||| || ||||| ||| || | |||||| || ||| || Sbjct 16977 ATTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGT 16918 Query 115968 GGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAG 116027 ||||| || || | ||| | ||||| || ||||| | | | || ||| ||| | Sbjct 16917 TGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAA 16858 Query 116028 GGCGTCCCAGTCGTAGTTGAGCTTT--GTCTCCCCCTCCCACATATCAAACTGGAGGATA 116085 || | ||||||| | || | | || | || ||| ||||||| | ||||| Sbjct 16857 GGTGGCCCAGTCCCAAA-GATCGGTAGGTGTAACCTTCC-ACATATCGTATTGGAGCTCT 16800 Query 116086 CCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG 116145 ||||| || ||||| || || || ||||||| || | || | || || | || Sbjct 16799 CCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCA 16740 Query 116146 G-AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204 || | || ||| | ||||| || || ||||| || || | || | || Sbjct 16739 ACAGATGAAGTCAAGG-CAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGGTGTTT 16681 Query 116205 GGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATA--AATACATCCGCGAGACCTTGG 116262 ||||||| || || || | |||||| | | || || ||||| |||||||| ||| Sbjct 16680 GGCCTCGGGAGACTCGAATGGGAGACG--AAGAGCTAGGAARACATCGGCGAGACCCTGG 16623 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGA 116319 ||||| | |||| || | || | | ||| ||| || || ||| || || Sbjct 16622 ACACCAACAGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGG 16566 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || | || | ||||| | | | || | || || |||||||| || || ||| Sbjct 16565 TAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGA 16506 Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 ||||| | | || | |||| | | || ||||| || | || || || | || Sbjct 16505 AGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAA 16446 Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 |||| ||||| |||| | ||| || || ||| || | || || || || | | Sbjct 16445 GCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACGATCTCTGTGCAGAGA 16386 Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 || || || ||||| || | |||||| ||||| ||| ||| || ||||||||| Sbjct 16385 TTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTACGGTTGCAAGCATCCTTG 16326 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATC 116618 |||||||| | || | || ||||| ||||| | || ||| || | | ||| | | || Sbjct 16325 TAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTC 16266 Query 116619 GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT--CCT----CCTCGTACTTTGTGTAGAG 116672 | | || | ||| ||| || |||| ||| |||||||||| ||| || Sbjct 16265 TGGGCCTTGA----TGGTCTTG---CGACCCTTGCCTTCTGCCTCGTACTTCTCGTAAAG 16213 Query 116673 GGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAG 116732 |||||||| || ||||| | | || | || || || || | || || | || Sbjct 16212 AGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAG 16153 Query 116733 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792 | |||| |||| || |||||| |||||||||||||| ||||| ||||| || || | Sbjct 16152 TGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTA 16093 Query 116793 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 116852 ||||||||| ||| |||| |||| || | || || || || | || | || || Sbjct 16092 GAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTC 16033 Query 116853 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACC 116909 | || ||| |||||||| || || ||||| | ||||| | || ||| | || Sbjct 16032 AAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCC 15973 Query 116910 AGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATC 116969 | |||||| ||||| || || || ||| || || || ||||| |||| ||||| | Sbjct 15972 ACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTT 15913 Query 116970 AGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCAT 117029 || | || ||||| || ||| || |||| | || ||||| | || Sbjct 15912 GGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAG 15853 Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089 ||| || || || || ||| ||||| || || | ||||| | |||| || || Sbjct 15852 ACCGATGCCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACC 15793 Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 117149 ||||| ||| |||| | |||| | |||||| || | ||||| |||||| Sbjct 15792 GTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGT 15733 Query 117150 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCG 117207 || ||| ||||||||||| | |||||| || | | |||| ||||||| || | Sbjct 15732 GCCGGCGGCAAAGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATCAAATTG 15675 Query 117208 TAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAAC 117267 || ||||| | || ||| || |||||||||||||| | | || | ||| | | Sbjct 15674 TATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCCACAGCCACTCTCATGATC 15615 Query 117268 ATGTATTGGGG 117278 |||| ||| || Sbjct 15614 ATGTGTTGTGG 15604 >seq172 Length=386049 Score = 145 bits (160), Expect = 9e-30 Identities = 303/444 (68%), Gaps = 8/444 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| |||| ||||||||||||||||| ||||| || | ||| ||| |||||||| Sbjct 24899 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCAT 24958 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || |||||||| || || || || | | ||| | | ||| ||| Sbjct 24959 GAAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG--GAGCAGA 25016 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 ||||| | |||| |||||||||| | |||| ||| |||||| |||| || | Sbjct 25017 CGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCA 25076 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || || || | |||| | | ||| || || ||||| || | | | | Sbjct 25077 CAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCT 25136 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGA-GTTCCACAGCAAACT 127526 || | | | | | || | || | | |||| ||| | | || ||||| | Sbjct 25137 TGGACTGCTTGCTTGCTTGGACGATGGT-TCAAGTGGGAGAACAAGAGGCAG-GCAAAGT 25194 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | ||||||||| ||||||||||||||||| || || |||||| ||||||||||| | Sbjct 25195 CGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCA 25254 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 |||| ||||||||||||||||| || | ||||| || ||||||||||| ||||| | Sbjct 25255 GACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAA 25314 Query 127647 CACACGCGAACGCAAATAGACGCT 127670 || || || |||| ||||||| Sbjct 25315 CAGCGGCAAAGGCAACGAGACGCT 25338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503304229280