Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq344 118 1e-21 seq359 104 3e-17 seq116 96.9 4e-15 >seq344 Length=396322 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||||| ||||| ||||| || || |||||||| |||| ||| Sbjct 110638 ACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCG 110697 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| ||||| ||||||||||||| || | || ||||||||| | Sbjct 110698 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGG 110757 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||||| | | | ||||| || || || || | |||||||| ||| Sbjct 110758 ATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTG 110817 Query 46565 CCCGT 46569 || || Sbjct 110818 CCGGT 110822 Score = 105 bits (116), Expect = 8e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| ||||| | | ||||| ||||||||| | ||| |||||| ||||| ||||| Sbjct 109865 TTATTGACCTCCACGAAGACGCAGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTA 109924 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| | |||||| | || || | |||||| || || || || | | ||||||||| Sbjct 109925 GTCGCTCAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTC 109984 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 || || | | |||||| ||| |||||| ||||| ||| | | | ||||| || Sbjct 109985 GGGTGGGATACCCTCCTTATCCTGGATCTTGGACTTGA-CGTTGTCGATTGTGTCAGACG 110043 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || |||| || || || || || |||| || || || ||||| ||||| Sbjct 110044 ACTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 110098 Score = 100 bits (110), Expect = 3e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| |||||||| ||||| | || || | |||||| || ||||| Sbjct 110363 CTCCTTCTGGATGTTGTAATCGGATAGGGTGCGGCCATCCTCCAACTGCTTTCCAGCGAA 110422 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||||| || | || ||||||||| ||||||| ||||| | Sbjct 110423 AATGAGTCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATT 110482 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || ||| ||||| || || | |||||||| ||||| || || || || || Sbjct 110483 GTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 110542 >seq359 Length=494912 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 ||||||| || ||||||||||| ||||| || | || ||||||||||| || ||||| | Sbjct 437949 CCTTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGA 437890 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| || |||||||||| || | | |||||||||| |||||| ||||| | Sbjct 437889 TCAAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 437830 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||| ||| || || || || | || || || || || || || ||||| || | Sbjct 437829 CAATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGA 437770 Query 46584 AG 46585 || Sbjct 437769 AG 437768 >seq116 Length=121463 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || || || | || ||||| |||||||||||||| Sbjct 20354 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAA 20413 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 || | ||| || ||||||| || | || |||||||||| |||||| ||||| Sbjct 20414 GATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA 20469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565234810736160