Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq344 118 1e-21
seq359 104 3e-17
seq116 96.9 4e-15
>seq344
Length=396322
Score = 118 bits (130), Expect = 1e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | ||| ||||| ||||| ||||| || || |||||||| |||| |||
Sbjct 110638 ACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCG 110697
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| ||||| ||||| ||||||||||||| || | || ||||||||| |
Sbjct 110698 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGG 110757
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| |||||| | | | ||||| || || || || | |||||||| |||
Sbjct 110758 ATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTG 110817
Query 46565 CCCGT 46569
|| ||
Sbjct 110818 CCGGT 110822
Score = 105 bits (116), Expect = 8e-18
Identities = 166/235 (71%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419
||||| ||||| | | ||||| ||||||||| | ||| |||||| ||||| |||||
Sbjct 109865 TTATTGACCTCCACGAAGACGCAGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTA 109924
Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479
|||| | |||||| | || || | |||||| || || || || | | |||||||||
Sbjct 109925 GTCGCTCAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTC 109984
Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538
|| || | | |||||| ||| |||||| ||||| ||| | | | ||||| ||
Sbjct 109985 GGGTGGGATACCCTCCTTATCCTGGATCTTGGACTTGA-CGTTGTCGATTGTGTCAGACG 110043
Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || || |||| || || || || || |||| || || || ||||| |||||
Sbjct 110044 ACTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 110098
Score = 100 bits (110), Expect = 3e-16
Identities = 130/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| |||||||| ||||| | || || | |||||| || |||||
Sbjct 110363 CTCCTTCTGGATGTTGTAATCGGATAGGGTGCGGCCATCCTCCAACTGCTTTCCAGCGAA 110422
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | ||||||||||| || | || ||||||||| ||||||| ||||| |
Sbjct 110423 AATGAGTCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATT 110482
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | || ||| ||||| || || | |||||||| ||||| || || || || ||
Sbjct 110483 GTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 110542
>seq359
Length=494912
Score = 104 bits (114), Expect = 3e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
||||||| || ||||||||||| ||||| || | || ||||||||||| || ||||| |
Sbjct 437949 CCTTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGA 437890
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| || |||||||||| || | | |||||||||| |||||| ||||| |
Sbjct 437889 TCAAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 437830
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||| ||| || || || || | || || || || || || || ||||| || |
Sbjct 437829 CAATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGA 437770
Query 46584 AG 46585
||
Sbjct 437769 AG 437768
>seq116
Length=121463
Score = 96.9 bits (106), Expect = 4e-15
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || || || | || ||||| ||||||||||||||
Sbjct 20354 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAA 20413
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
|| | ||| || ||||||| || | || |||||||||| |||||| |||||
Sbjct 20414 GATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA 20469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565234810736160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |