Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq172 123 2e-23 seq116 105 7e-18 seq344 104 2e-17 seq359 87.8 2e-12 >seq172 Length=386049 Score = 123 bits (136), Expect = 2e-23 Identities = 579/908 (64%), Gaps = 65/908 (7%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| |||||| || ||| | || ||||| || || || || ||||| | Sbjct 24881 CATAACACCAGCTTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGC 24940 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707 | ||| ||| | ||| || || || |||||||| | ||||| | ||| | | || Sbjct 24941 AAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACC 25000 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767 || || ||| |||||| | || || |||||||| ||||||||| ||| | Sbjct 25001 GAG-AG--CGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGC 25057 Query 132768 ATTAAGTCCCAGCAGACGCACCGGCA-GCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 || | || || ||| |||| || | | || || || | || ||||||||| | | Sbjct 25058 GTTCATGCCGAGAAGA-GCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 25116 Query 132827 CCGCGTCGGTGACGATTTCCCTAAC-GCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885 | || ||||| | | || || || || ||| || || || ||| || | Sbjct 25117 CAGCCTCGGTAATAACGTCTTGGACTGCTTGCTT-GCTTGGACGATGGTTCAAGTGGGAG 25175 Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 |||| | ||| ||||||||| || | || ||||| | ||| ||||| |||||| | Sbjct 25176 AACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAG 25235 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || || | || ||||| || || || || || | ||| ||||| | |||||| || Sbjct 25236 AAGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCG 25295 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 || ||||||| ||||| || || || || || || || |||| |||| || | || Sbjct 25296 GAGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTCC 25355 Query 133066 TTG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCA-----TC 133119 || || | |||||| | | ||||| |||||||| | |||| ||| || | || Sbjct 25356 TTATCTTG-GATCCATCTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGGAACTAGATC 25414 Query 133120 GT-TTCGA---TGGC---GTTCAACAAACG-GAG-----TTTCTCTTC-CGAG------G 133159 || || || |||| || | | ||| ||| || || || ||| | Sbjct 25415 GTGTTAGAATATGGCACTGTGCTAATGACGCGAGGCAACTTACTGGTCTCGATAGCATTG 25474 Query 133160 AAC-------------------GCAC------GTAGGTGTCGATGAGGGTCGAATACATT 133194 ||| || | ||| ||||||||||| || || | Sbjct 25475 AACAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATGAGAAGGGAGTATGTC 25534 Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 || ||||| | ||||||||| |||||| || ||||| ||||| || ||||| ||| Sbjct 25535 TCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAGCGAGCCTCAGGTACC 25594 Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314 || || ||| ||| ||||| | || || |||||||| || ||||| || ||| Sbjct 25595 TGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATTCCGTCAGATGCAGCG 25654 Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAG 133371 || || || || ||||| || || | | ||| | ||| || | | | |||| Sbjct 25655 AAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTGAGTCTGTTGTTCCAG 25714 Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431 ||| | ||||||||||| || | || ||| ||||||| || || ||||| || || Sbjct 25715 TCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAATGAAGCCTCTGCCTTC 25774 Query 133432 TTGTACAT 133439 |||||||| Sbjct 25775 TTGTACAT 25782 >seq116 Length=121463 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||||||||| || || ||| | || || ||| | |||| | | | |||| | || Sbjct 20523 TCACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGATAACG-TCAAG 20465 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || |||| ||||| ||||| |||||| |||||||||| || ||||| | ||| ||| Sbjct 20464 TCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGC 20405 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || || || || || | || |||||| ||||||||||||||| ||||| |||| || Sbjct 20404 AAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTT 20345 Query 38445 CATTTGGTGCTGCGT 38459 ||| | || || ||| Sbjct 20344 CATCTAGTCCTCCGT 20330 >seq344 Length=396322 Score = 104 bits (114), Expect = 2e-17 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| |||||||| |||| |||||| | | |||| | | || | | |||| Sbjct 110822 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATG--TCAAGA 110765 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||| |||||| ||||||| ||||| | || | ||| |||| Sbjct 110764 GCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCA 110705 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||||| || |||| ||||| ||| || ||||||||||| |||||| | || || | Sbjct 110704 AGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTC 110645 Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | || || ||| | | ||||| Sbjct 110644 ATCTCGTCCTCCGTCTTCGTGGCGG 110620 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || || || ||||| |||||||| |||| ||||| | |||| | | | Sbjct 110544 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCG 110485 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || |||| ||||| ||||| || || ||||||| ||| | |||| Sbjct 110484 ACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAGAGACTCA 110425 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 ||| ||| || || ||| |||| || | |||||||| ||| ||||||||||| |||| Sbjct 110424 TTTTCGCTGGAAAGCAGTTGGAGGATGGCCGCACCCTATCCGATTACAACATCCAGAAGG 110365 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459 | | || || || ||||| || ||| Sbjct 110364 AGTCTACTCTCCACTTGGTCCTCCGT 110339 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || || ||||| || || ||||||| ||| | || |||| || || || Sbjct 110014 AAGATCCAGGATAAGGAGGGTATCCCACCCGACCAGCAGAGACTTATTTTTGCTGGTAAG 109955 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||| |||| || | ||||| | | ||||||||||||||| ||||| | || || ||| Sbjct 109954 CAGTTGGAGGATGGCCGCACTTTGAGCGACTACAACATCCAGAAGGAGTCTACTCTCCAT 109895 Query 38448 TTGGTGCTGCGT 38459 ||||||||||| Sbjct 109894 CTGGTGCTGCGT 109883 >seq359 Length=494912 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGT 38311 ||||| ||||| ||||| || || || || ||| |||| || ||| || |||| | | | Sbjct 437769 TTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGATT 437828 Query 38312 GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | || | | || || |||| ||||| |||||||| ||| ||||||| || || | Sbjct 437829 GACAATG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGCAACGTTT 437887 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| || || ||||| || || | || || || |||||||||||| ||||| Sbjct 437888 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 437947 Query 38432 GG 38433 || Sbjct 437948 GG 437949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169623902720