Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq172 123 2e-23
seq116 105 7e-18
seq344 104 2e-17
seq359 87.8 2e-12
>seq172
Length=386049
Score = 123 bits (136), Expect = 2e-23
Identities = 579/908 (64%), Gaps = 65/908 (7%)
Strand=Plus/Plus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| |||||| || ||| | || ||||| || || || || ||||| |
Sbjct 24881 CATAACACCAGCTTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGC 24940
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707
| ||| ||| | ||| || || || |||||||| | ||||| | ||| | | ||
Sbjct 24941 AAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACC 25000
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767
|| || ||| |||||| | || || |||||||| ||||||||| ||| |
Sbjct 25001 GAG-AG--CGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGC 25057
Query 132768 ATTAAGTCCCAGCAGACGCACCGGCA-GCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826
|| | || || ||| |||| || | | || || || | || ||||||||| | |
Sbjct 25058 GTTCATGCCGAGAAGA-GCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 25116
Query 132827 CCGCGTCGGTGACGATTTCCCTAAC-GCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885
| || ||||| | | || || || || ||| || || || ||| || |
Sbjct 25117 CAGCCTCGGTAATAACGTCTTGGACTGCTTGCTT-GCTTGGACGATGGTTCAAGTGGGAG 25175
Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945
|||| | ||| ||||||||| || | || ||||| | ||| ||||| |||||| |
Sbjct 25176 AACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAG 25235
Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005
|| || | || ||||| || || || || || | ||| ||||| | |||||| ||
Sbjct 25236 AAGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCG 25295
Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065
|| ||||||| ||||| || || || || || || || |||| |||| || | ||
Sbjct 25296 GAGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTCC 25355
Query 133066 TTG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCA-----TC 133119
|| || | |||||| | | ||||| |||||||| | |||| ||| || | ||
Sbjct 25356 TTATCTTG-GATCCATCTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGGAACTAGATC 25414
Query 133120 GT-TTCGA---TGGC---GTTCAACAAACG-GAG-----TTTCTCTTC-CGAG------G 133159
|| || || |||| || | | ||| ||| || || || ||| |
Sbjct 25415 GTGTTAGAATATGGCACTGTGCTAATGACGCGAGGCAACTTACTGGTCTCGATAGCATTG 25474
Query 133160 AAC-------------------GCAC------GTAGGTGTCGATGAGGGTCGAATACATT 133194
||| || | ||| ||||||||||| || || |
Sbjct 25475 AACAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATGAGAAGGGAGTATGTC 25534
Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254
|| ||||| | ||||||||| |||||| || ||||| ||||| || ||||| |||
Sbjct 25535 TCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAGCGAGCCTCAGGTACC 25594
Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314
|| || ||| ||| ||||| | || || |||||||| || ||||| || |||
Sbjct 25595 TGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATTCCGTCAGATGCAGCG 25654
Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAG 133371
|| || || || ||||| || || | | ||| | ||| || | | | ||||
Sbjct 25655 AAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTGAGTCTGTTGTTCCAG 25714
Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431
||| | ||||||||||| || | || ||| ||||||| || || ||||| || ||
Sbjct 25715 TCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAATGAAGCCTCTGCCTTC 25774
Query 133432 TTGTACAT 133439
||||||||
Sbjct 25775 TTGTACAT 25782
>seq116
Length=121463
Score = 105 bits (116), Expect = 7e-18
Identities = 142/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||||||||| || || ||| | || || ||| | |||| | | | |||| | ||
Sbjct 20523 TCACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGATAACG-TCAAG 20465
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
|| |||| ||||| ||||| |||||| |||||||||| || ||||| | ||| |||
Sbjct 20464 TCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGC 20405
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| || || || || | || |||||| ||||||||||||||| ||||| |||| ||
Sbjct 20404 AAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTT 20345
Query 38445 CATTTGGTGCTGCGT 38459
||| | || || |||
Sbjct 20344 CATCTAGTCCTCCGT 20330
>seq344
Length=396322
Score = 104 bits (114), Expect = 2e-17
Identities = 148/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| ||||| |||||||| |||| |||||| | | |||| | | || | | ||||
Sbjct 110822 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATG--TCAAGA 110765
Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
|| |||| ||||| ||||| |||||| ||||||| ||||| | || | ||| ||||
Sbjct 110764 GCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCA 110705
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445
| ||||| || |||| ||||| ||| || ||||||||||| |||||| | || || |
Sbjct 110704 AGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTC 110645
Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| | || || ||| | | |||||
Sbjct 110644 ATCTCGTCCTCCGTCTTCGTGGCGG 110620
Score = 102 bits (112), Expect = 8e-17
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || || || ||||| |||||||| |||| ||||| | |||| | | |
Sbjct 110544 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCG 110485
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
| | | || || |||| ||||| ||||| || || ||||||| ||| | ||||
Sbjct 110484 ACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAGAGACTCA 110425
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
||| ||| || || ||| |||| || | |||||||| ||| ||||||||||| ||||
Sbjct 110424 TTTTCGCTGGAAAGCAGTTGGAGGATGGCCGCACCCTATCCGATTACAACATCCAGAAGG 110365
Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459
| | || || || ||||| || |||
Sbjct 110364 AGTCTACTCTCCACTTGGTCCTCCGT 110339
Score = 86.0 bits (94), Expect = 6e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| || || ||||| || || ||||||| ||| | || |||| || || ||
Sbjct 110014 AAGATCCAGGATAAGGAGGGTATCCCACCCGACCAGCAGAGACTTATTTTTGCTGGTAAG 109955
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||| |||| || | ||||| | | ||||||||||||||| ||||| | || || |||
Sbjct 109954 CAGTTGGAGGATGGCCGCACTTTGAGCGACTACAACATCCAGAAGGAGTCTACTCTCCAT 109895
Query 38448 TTGGTGCTGCGT 38459
|||||||||||
Sbjct 109894 CTGGTGCTGCGT 109883
>seq359
Length=494912
Score = 87.8 bits (96), Expect = 2e-12
Identities = 130/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGT 38311
||||| ||||| ||||| || || || || ||| |||| || ||| || |||| | | |
Sbjct 437769 TTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGATT 437828
Query 38312 GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| || | | || || |||| ||||| |||||||| ||| ||||||| || || |
Sbjct 437829 GACAATG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGCAACGTTT 437887
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | ||| || || ||||| || || | || || || |||||||||||| |||||
Sbjct 437888 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 437947
Query 38432 GG 38433
||
Sbjct 437948 GG 437949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169623902720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |