Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq185 123 2e-22 seq248 91.5 1e-12 seq125 87.8 1e-11 >seq185 Length=385050 Score = 123 bits (136), Expect = 2e-22 Identities = 415/639 (65%), Gaps = 8/639 (1%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 ||||||||||| || || || ||||| ||||| | ||| | || | |||| | || Sbjct 61628 ACAAGACGATTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACC 61569 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | || | || || || | || ||| |||| ||||| ||||| ||||| | ||| Sbjct 61568 TCAAAGATACCCTCCTCGATAGTCAAGAGAGAGACATCGAAAGTTCCTCCACCAAGATCG 61509 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || ||||| || || || || |||||||| || |||| ||||| Sbjct 61508 AAGATGAGGACATTACGCTCACCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCAGCG 61449 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 |||||||| || || || |||| | |||||| ||||| || || || ||||| || Sbjct 61448 GCAGTTGGCTCGTTGATGATTCGGAGAACATTGAGACCGGCGATCAGACCGGCATCCTTT 61389 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC- 518313 || ||||| | || || || | || || || || ||||||| ||||| | | || Sbjct 61388 GTAGCTTGACGCTGGGAGTCAGTGAAGTAAGCTGGTACAGTAACGACGGCGTTGTTGACG 61329 Query 518314 -TTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 ||| | || | ||||| || || | | |||| || || ||||| || || | Sbjct 61328 GTTCCT--CCGAGGTAAGCCTCAGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGA 61271 Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTA 518431 | | || || | ||||||| || |||| | | || || | ||| || Sbjct 61270 TCTCCTCAGGTGTGAATTGCTTCTTCTCGCCCTTGAACTCA-ACCTCGACGACTGGCTTT 61212 Query 518432 TTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTG-GTC 518490 |||| | || ||| | || || ||| |||||||| | || || || | || Sbjct 61211 CCACCACGGTCAAGAACAGTGAAGGGGAAGTGCTTCATATCAGCCTGGAC-CTCAGCATC 61153 Query 518491 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGC 518550 | | | ||||| | || || ||||| || | ||| ||| |||| || || || Sbjct 61152 TGCGTACTTGCGTCCAATCAGACGCTTGGCATCGAAGACAGTGTTGATTGGGTTCATGGC 61093 Query 518551 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 518610 | |||| | ||||| |||||||| |||| | | || || ||||| || | || | || Sbjct 61092 AACTTGGTTCTTGGCAGCATCTCCGATCAAACGCTCAGTATCTGTGAAGGCGACGAAGGA 61033 Query 518611 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 518649 || |||||||| || || || || || ||||||||||| Sbjct 61032 AGGTGTTGTGCGGTTTCCCTGGTCGTTTGCAATAATTTC 60994 >seq248 Length=298758 Score = 91.5 bits (100), Expect = 1e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 ||||| ||||||||| || | || ||||||||||| || ||||||||| | || |||||| Sbjct 87008 GGTAAGGAAGGTCGTCTTCGTGGTAATTTGATGGGTAAGCGTGTCGATTTCTCGGCACGT 86949 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCC 668964 || || |||||| ||| || ||| | |||| |||| ||||| || || Sbjct 86948 ACCGTCATTACTGGTGACCCGAATTTATCTCTGGATGAGGTTGGAGTACC 86899 >seq125 Length=220014 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 518174 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 518233 ||||| || |||| ||||||||||||||| || || || || | | ||| || |||||| Sbjct 158178 AGACCGTAGGCAATAGCAGCAGCAGTTGGCTCGTTGATGATGCGGAGAACGTTGAGACCA 158237 Query 518234 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 518293 ||||| || ||||| ||||| ||||| | ||| ||||| || || ||||| ||| Sbjct 158238 GCAATGGCACCAGCATCCTTAGTAGCTTGACGTTGGTTGTCGTTGAAGTAGGCAGGGACA 158297 Query 518294 GTAATAACGGC 518304 || || || || Sbjct 158298 GTGATGACAGC 158308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780797191366648