Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq185 123 2e-22
seq248 91.5 1e-12
seq125 87.8 1e-11
>seq185
Length=385050
Score = 123 bits (136), Expect = 2e-22
Identities = 415/639 (65%), Gaps = 8/639 (1%)
Strand=Plus/Minus
Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074
||||||||||| || || || ||||| ||||| | ||| | || | |||| | ||
Sbjct 61628 ACAAGACGATTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACC 61569
Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134
| || | || || || | || ||| |||| ||||| ||||| ||||| | |||
Sbjct 61568 TCAAAGATACCCTCCTCGATAGTCAAGAGAGAGACATCGAAAGTTCCTCCACCAAGATCG 61509
Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194
|| || || ||||| || || || || |||||||| || |||| |||||
Sbjct 61508 AAGATGAGGACATTACGCTCACCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCAGCG 61449
Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254
|||||||| || || || |||| | |||||| ||||| || || || ||||| ||
Sbjct 61448 GCAGTTGGCTCGTTGATGATTCGGAGAACATTGAGACCGGCGATCAGACCGGCATCCTTT 61389
Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC- 518313
|| ||||| | || || || | || || || || ||||||| ||||| | | ||
Sbjct 61388 GTAGCTTGACGCTGGGAGTCAGTGAAGTAAGCTGGTACAGTAACGACGGCGTTGTTGACG 61329
Query 518314 -TTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372
||| | || | ||||| || || | | |||| || || ||||| || || |
Sbjct 61328 GTTCCT--CCGAGGTAAGCCTCAGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGA 61271
Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTA 518431
| | || || | ||||||| || |||| | | || || | ||| ||
Sbjct 61270 TCTCCTCAGGTGTGAATTGCTTCTTCTCGCCCTTGAACTCA-ACCTCGACGACTGGCTTT 61212
Query 518432 TTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTG-GTC 518490
|||| | || ||| | || || ||| |||||||| | || || || | ||
Sbjct 61211 CCACCACGGTCAAGAACAGTGAAGGGGAAGTGCTTCATATCAGCCTGGAC-CTCAGCATC 61153
Query 518491 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGC 518550
| | | ||||| | || || ||||| || | ||| ||| |||| || || ||
Sbjct 61152 TGCGTACTTGCGTCCAATCAGACGCTTGGCATCGAAGACAGTGTTGATTGGGTTCATGGC 61093
Query 518551 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 518610
| |||| | ||||| |||||||| |||| | | || || ||||| || | || | ||
Sbjct 61092 AACTTGGTTCTTGGCAGCATCTCCGATCAAACGCTCAGTATCTGTGAAGGCGACGAAGGA 61033
Query 518611 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 518649
|| |||||||| || || || || || |||||||||||
Sbjct 61032 AGGTGTTGTGCGGTTTCCCTGGTCGTTTGCAATAATTTC 60994
>seq248
Length=298758
Score = 91.5 bits (100), Expect = 1e-12
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914
||||| ||||||||| || | || ||||||||||| || ||||||||| | || ||||||
Sbjct 87008 GGTAAGGAAGGTCGTCTTCGTGGTAATTTGATGGGTAAGCGTGTCGATTTCTCGGCACGT 86949
Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCC 668964
|| || |||||| ||| || ||| | |||| |||| ||||| || ||
Sbjct 86948 ACCGTCATTACTGGTGACCCGAATTTATCTCTGGATGAGGTTGGAGTACC 86899
>seq125
Length=220014
Score = 87.8 bits (96), Expect = 1e-11
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 518174 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 518233
||||| || |||| ||||||||||||||| || || || || | | ||| || ||||||
Sbjct 158178 AGACCGTAGGCAATAGCAGCAGCAGTTGGCTCGTTGATGATGCGGAGAACGTTGAGACCA 158237
Query 518234 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 518293
||||| || ||||| ||||| ||||| | ||| ||||| || || ||||| |||
Sbjct 158238 GCAATGGCACCAGCATCCTTAGTAGCTTGACGTTGGTTGTCGTTGAAGTAGGCAGGGACA 158297
Query 518294 GTAATAACGGC 518304
|| || || ||
Sbjct 158298 GTGATGACAGC 158308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780797191366648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |