Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq185 228 1e-54 seq98 134 2e-26 >seq185 Length=385050 Score = 228 bits (252), Expect = 1e-54 Identities = 501/745 (67%), Gaps = 8/745 (1%) Strand=Plus/Minus Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 ||||||| || || ||||||||||| |||||| || || | ||||| | Sbjct 61669 CTTTCTTGTGCTTGCGTTTAAACTCACTTACGAAGTGGTTAACAAGACGATTGTCGAAGT 61610 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 | |||||||||||||| || || || ||||| | ||||| ||||||||||| | || | Sbjct 61609 CCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACCTCAAAGATACCCTCCTCGA 61550 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583 | | || | || ||||| || || || ||||| || || || ||||| || || | Sbjct 61549 TAGTCAAGAGAGAGACATCGAAAGTTCCTCCACCAAGATCGAAGATGAGGACATTACGCT 61490 Query 7584 CGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAA 7643 | | || ||||| || |||||||| || || || || || ||||| || || || | Sbjct 61489 CACCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCAGCGGCAGTTGGCTCGTTGATGA 61430 Query 7644 TACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAAT 7703 | || ||| || || || || || | ||||| || || ||||| || || || | Sbjct 61429 TTCGGAGAACATTGAGACCGGCGATCAGACCGGCATCCTTTGTAGCTTGACGCTGGGAGT 61370 Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGAC-TTTCTTACCGAGATACGAT 7762 | | ||||| || || || || ||||| |||| |||| ||| | ||||| || | Sbjct 61369 CAGTGAAGTAAGCTGGTACAGTAACGACGGCGTTGTTGACGGTTCCT-CCGAGGTAAGCC 61311 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | ||| |||| ||| | | ||| || || ||||| |||| | || || Sbjct 61310 TCAGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATCTCCTCAGGTGTGAATTGC 61251 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882 ||| | || || || || ||||| || | | || || || || ||| | | ||| Sbjct 61250 TTCTTCTCGCCCTTGAACTCAACCTCGACGACTGGCTT-TC--CACCACGGTCAAGAACA 61194 Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATA 7942 | | | | | |||||||| | ||||||| || | |||| | ||| || Sbjct 61193 GTGAAGGGGAAGTGCTTCATATCAGCCTGGACCTCAGCATCTGCGTACTTGCGTCCAATC 61134 Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002 |||||||| ||||| || || ||||| | ||||||||||| ||||||||| || || Sbjct 61133 AGACGCTTGGCATCGAAGACAGTGTTGATTGGGTTCATGGCAACTTGGTTCTTGGCAGCA 61074 Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTC 8062 || ||||| | ||| ||| || || || || |||||| | || || || || || || Sbjct 61073 TCTCCGATCAAACGCTCAGTA---TCTGTGAAGGCGACGAAGGAAGGTGTTGTGCGGTTT 61017 Query 8063 CCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATAC 8122 || |||||||| ||||||||||| | || || | | ||| || ||||| || || Sbjct 61016 CCCTGGTCGTTTGCAATAATTTCGATACGATCATCTCTGAAGATACCCACGCAAGAGTAG 60957 Query 8123 GTTGTTCCTAAATCAATACCGATTG 8147 || || || | ||| || || |||| Sbjct 60956 GTGGTACCCAGATCGATTCCTATTG 60932 >seq98 Length=652022 Score = 134 bits (148), Expect = 2e-26 Identities = 246/358 (69%), Gaps = 13/358 (4%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||| || |||||||| || || || ||||| | || || || | ||| Sbjct 362202 TCGAAATCTTCTCCTCCCAAGTGGGTGTCACCAGCGGTTGAGAGAACCTCGAAAACACCA 362261 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAGT 7573 | |||||| || | |||||||| || || || ||||| || || | ||||| | Sbjct 362262 CGATCAATGGACAAGAGGGAAACATCGAAGGTTCCTCCACCGAGATCGTAGACAATGATT 362321 Query 7574 --ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 ||| || || | | | |||| || || ||||| |||||||| || || || | Sbjct 362322 TGACGCTC---TC-----CCTCGGTCTTGTCAAGTCCGTATGCGATAGCTGCGGCGGTAG 362373 Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 |||| || | |||||||| ||||| || || ||| | ||||| || || |||| Sbjct 362374 GTTCGTTGACGATACGAAGGACGTTCAAACCGGCGATAACACCGGCATCCTTGGTAGCTT 362433 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 ||| || ||||| ||||| || ||||| || || || || | || || || | | Sbjct 362434 GTCTCTGGTTGTCGTTGAAGTATGCGGGGACGGTAACAACGGCATGGGTAACCTTGTGTC 362493 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 |||| || ||||| |||| ||| ||||| || ||||| ||| | ||| |||||||| Sbjct 362494 CGAGGTATGATTCGGCGACATCCTTCATCTTTCCAAGAATCATGGCTGAGATCTCTTC 362551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128766906720