Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq487 331 1e-85 seq172 156 5e-33 >seq487 Length=114140 Score = 331 bits (366), Expect = 1e-85 Identities = 929/1399 (66%), Gaps = 43/1399 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| ||||| ||||| | || || | ||||| || ||||| |||||||| || | Sbjct 15604 CCACAACACATGATCATGAGAGTGGCTGTGGGTATTCACGGGGATGATATTGAGAGTGCT 15663 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||||||| | ||||||| | ||| || | ||||| | ||||||||||| Sbjct 15664 ATCGAGACATACAATTTGATGTCCAGCAAGTACTTT-ACACACGCGTCTCCAACCCTCTT 15722 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| || |||||| | | ||| | || || ||| | || | | |||||||| Sbjct 15723 TGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGACATGAAGGAGGA 15782 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 ||| | || ||||||| ||||||| |||||| ||||| ||| ||||| Sbjct 15783 CAGTATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGATCTCCAAGAATGCTGG 15842 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 || ||||| || | |||| || | |||| || ||| || ||||| Sbjct 15843 AGGCATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTACATTGCTGGCACAAA 15902 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 || | || | |||||| |||| ||||| || || || ||| |||||| | ||||| Sbjct 15903 CGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACAGCCAGATATGT 15962 Query 111971 AAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 112027 |||| | ||| | ||| || || |||| |||| || |||||||||||||| Sbjct 15963 TGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAGCCATGGCACGC 16022 Query 112028 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGGTGC 112085 ||| || | ||||||||||| | || ||||| || | ||||| | |||| | Sbjct 16023 TGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAAGTTCGCGCT-- 16080 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 ||||||||||||| |||||| |||||||||||||||||||||||| | |||||| ||| | Sbjct 16081 CGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAAGAAT 16140 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205 || | ||| | || | || || || || |||||||| | |||| ||||| Sbjct 16141 GGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACGGTGAC 16200 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTGC 112263 || ||||| || || ||| |||||||||| || ||| | | | | || ||| | | Sbjct 16201 GAATTTGAGGCTCTTTACGAGAAGTACGAGGCAG-AAGGCAAGGGTC-GCAAGACCAT-C 16257 Query 112264 CAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 || | || | | ||| | | || ||| || | ||||||||||| || | || | Sbjct 16258 AAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCCTTTC 16317 Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||||| ||||| || || || |||| ||||||||||| ||||| | ||| ||| Sbjct 16318 ATGCTCTACAAGGATGCTTGCAACCGTAAGAGTAATCAGAAGAACCTTGGTACCATCCGC 16377 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGAGACGGCTGTGT 112440 || ||||| ||||| ||||| ||| | ||| ||| | || || ||| ||||| | Sbjct 16378 AGCTCCAATCTCTGCACAGAGATCGTTGAA--TACTGTGCACCTGACGAGGTCGCTGTTT 16435 Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA--TTTGA 112498 ||||| | || || | |||||||| | || || | ||| | | | | || | || Sbjct 16436 GTAACTTGGCTTCTCTTGCTCTCCCAACTTACGT-CAACCA-AAATGATGGCAGCTACGA 16493 Query 112499 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGA 112558 | | | || || ||||| || | |||| || ||| | |||| | || || Sbjct 16494 CTTTCAGAAGCTTCACGATGTCTGCCAGGTTGTCGTGAAGAACTTGAACAAGATCATCGA 16553 Query 112559 TAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615 | || | ||||| ||| ||| || || || ||| | | ||| | || || Sbjct 16554 CATCAACTACTACCCTGTTCCCGAG---GCACGCAAGAGCAATTTCCGTCACAGACCTAT 16610 Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGA 112672 || | | |||||||| |||||||| ||||| ||| | |||| ||| || |||| || Sbjct 16611 TGCTGTTGGTGTCCAGGGTCTCGCCGATGTYTTCCTAGCTCTTCGTCTCC---CATTCGA 16667 Query 112673 TTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732 || ||| || || | |||| | || || ||||| || || ||||| || || Sbjct 16668 GTCTCCCGAGGCCAAACACCTCAACATCCAGATCTTCGAGACCATCTACCACGCTGC-CT 16726 Query 112733 TGAGGCGA---GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 112789 ||| | ||| ||| | ||| || ||||| | || || || | || ||||| Sbjct 16727 TGACTTCATCTGTT--GAGCTTGCAAAGCAGCATGGTACTTACGAGACATACGAAGGTTC 16784 Query 112790 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACT 112848 |||||||||||||| | ||| |||| ||||||| ||||||| | ||| | | || | Sbjct 16785 CCCAGCTTCACAAGGAGAGCTCCAATACGATATGT-GGAAGGTTACACCTACCGATCTTT 16843 Query 112849 ACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908 ||||||| | | | ||| ||| |||||| || | ||||||||||||||| | | Sbjct 16844 GGGACTGGGCCACCTTGAAGCAACAAATCAAGCAGCACGGTCTTCGTAACAGTTTGCTCG 16903 Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968 | || || |||||||| ||| ||| |||||| | || || || || || || | Sbjct 16904 TTGCTCCTATGCCAACTGCCAGTACCAGTCAAATCCTTGGCTTCAACGAGTGTTTCGAGC 16963 Query 112969 CCTACACGACGAACATCTA 112987 | ||||| | || ||||| Sbjct 16964 CATACACATCCAATATCTA 16982 >seq172 Length=386049 Score = 156 bits (172), Expect = 5e-33 Identities = 311/456 (68%), Gaps = 20/456 (4%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || ||| |||| ||| | || ||||| ||||||||||||||||||||| ||||| ||| Sbjct 25345 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 25286 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 | |||| | ||| | |||||||| ||||| ||||||||||| ||||||||||||| Sbjct 25285 GCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 25226 Query 102294 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTT-TTCAAATTATT 102352 || ||||| |||||||| || |||||| || ||||| || ||| ||| | Sbjct 25225 CTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGC-CTGCCTCTTGTTC-------T 25174 Query 102353 GCGTATTAAACCAACGACTGAG--ACTATTCATTCTA-----TTGTTAAGGAAGCCGTTG 102405 | || ||||| || | || | | || || | || ||| || || |||| Sbjct 25173 CCCACTTGAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTG 25114 Query 102406 AGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTG 102465 |||| ||| | | ||| | ||||| ||||| || ||||| |||| ||||| ||| Sbjct 25113 AGATCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTG 25054 Query 102466 AAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGC 102525 |||| |||| ||||||| || ||||| | || | | || ||| Sbjct 25053 CTTTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCT--CCTCGCTCTCGGTAA 24996 Query 102526 CTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGG 102583 | || || || ||| || ||||| ||||||||||||||||| ||| | ||| Sbjct 24995 CGAGAAGTATTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCCCTTGCCGG 24936 Query 102584 GAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 102619 ||||| ||||||||||| ||| | || | ||||| Sbjct 24935 AAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTA 24900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738458285760