Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq487 269 3e-67
seq87 113 5e-20
seq222 89.7 6e-13
seq146 89.7 6e-13
seq287 86.0 7e-12
seq117 86.0 7e-12
seq314 82.4 9e-11
>seq487
Length=114140
Score = 269 bits (298), Expect = 3e-67
Identities = 1126/1751 (64%), Gaps = 61/1751 (3%)
Strand=Plus/Minus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556
||||||||| || ||||| |||||||| |||||||||||| ||||| | ||||| |
Sbjct 17235 GTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACGATGGT 17176
Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616
|| || || || ||||||||||||||||| | | ||||||||| | |||||||
Sbjct 17175 ACGCT---GGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATGTT 17119
Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCA 109676
|| ||||| || || || ||| | | || | | |||||| | | |||||
Sbjct 17118 AGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGACCA 17059
Query 109677 GAGACCGACCTTTTTGAGATCGT-CAACAAG-ATGCTTGTTGACCACGACAAATTCACCA 109734
|||||| | | ||||| | |||||| | | ||| || || |||||||||
Sbjct 17058 GAGACCCATATCGACAAGATCCTTCAACAACCAAGG--GTTAACGACTTGGAATTCACCA 17001
Query 109735 GCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCT 109794
|| || |||||| |||||| || | ||||| || ||||||||||| ||| |||
Sbjct 17000 GCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 16941
Query 109795 AGGATTTGTGCAGTGGAA---GCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGA 109851
|||||||| | ||| | || || ||||| ||||| | ||| | |||||| || |||
Sbjct 16940 AGGATTTG---ACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGA 16884
Query 109852 CCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTC 109911
|| | | ||| | | | || | | |||| || || || | || | ||
Sbjct 16883 CCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTA--- 16827
Query 109912 TCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTC 109971
||| ||| ||||||| ||| || | || | | ||| || ||||| | | | ||
Sbjct 16826 --ACCTTCC-ACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTC 16770
Query 109972 TCGTACGACCCCTCAACCTCGGCCAACTCG---GATGAAGCCTCTAGTGCCGCATGATAC 110028
||||| | || | || || | ||| ||||||| || || || || || ||
Sbjct 16769 TCGTAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAG--TCAAG-GCAGCGTGGTAG 16713
Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCA 110088
|| ||||| || || || || | | | | ||| | | ||||| || |||| |
Sbjct 16712 ATGGTCTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGGGAGACGA 16653
Query 110089 CAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATG 110148
| | || ||||| || |||||||| ||||| | | |||| || | || |
Sbjct 16652 AGAGCTAGGAARACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAA 16593
Query 110149 TTAGAGCGTCGAGCAGTTTCT-----ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGA 110203
|| || || || || || || ||||| ||||| |||||||| | || |
Sbjct 16592 TT---GC-TCTTGC-GTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCA 16538
Query 110204 GATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCT 110263
|||||| ||| || || || || || || | | ||| | | | | ||
Sbjct 16537 AGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTA-GCTGCCATCA 16479
Query 110264 CCTTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCT 110322
|| ||||| || | |||||||||| ||| || | || || |||| ||||||
Sbjct 16478 TTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCA 16419
Query 110323 TTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTC 110382
| |||||| | || || || || | ||||| || ||| ||| | ||||
Sbjct 16418 GGTGCACAGTATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTC 16359
Query 110383 TTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCC 110442
|||||||| || |||||| |||||||| ||||||||| | ||| | || || ||
Sbjct 16358 TTCTGATTACTCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCG 16299
Query 110443 GTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCG 110499
|| || | || ||| |||| | ||| | | || | ||| || || |||| | |
Sbjct 16298 GTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTG-GGCCTTGATGGTCTTGCG--ACCC 16242
Query 110500 AGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAA 110559
||||| |||||||||| ||| | |||||||||| | ||||| ||||||| |
Sbjct 16241 TTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCCTCAAATTCGTCACCGTAAACATCAGCA 16182
Query 110560 AGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTC 110619
||||| || || ||| || | || | ||| | ||| || |||||| | ||||
Sbjct 16181 AGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTC 16122
Query 110620 ATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCA 110679
||||| || || |||||||| | || |||| || || || ||| | || || |
Sbjct 16121 ATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTT 16062
Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG 110739
|| ||||| || || || | || || | || ||| | ||||||||| ||||| |||
Sbjct 16061 CCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAG 16002
Query 110740 ACAGCGATGGATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCA 110793
| |||| | || |||| | |||| |||| |||||| | ||||||
Sbjct 16001 ATCGCGAAAGCACCAGGGCGCTTATTTCCACCC---TGGTCAACATATCTGGCTGTGTTG 15945
Query 110794 TTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTG 110853
||||| || | ||||||||||| ||| || | ||| | || ||||| || |||
Sbjct 15944 TTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAA 15885
Query 110854 GACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATT 110913
| | ||||||| || ||||| || || ||| || || || || ||| ||
Sbjct 15884 GCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATGCCTCCAGCATTCTTGGAGATC 15825
Query 110914 TGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAAT 110972
||||| ||| |||| ||| | |||||||| || || || |||| || | ||
Sbjct 15824 ATGGCACAAGTCT-TGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGAT 15766
Query 110973 TAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGC 111032
| ||||| ||||| | || | | || || || || ||||| || || | |||
Sbjct 15765 CAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGC 15706
Query 111033 ATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCT 111090
|| || | || |||| ||||||| |||||||| |||| || | |||
Sbjct 15705 GTG--TGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCA 15648
Query 111091 TTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTT 111150
| ||||||||||| | || |||| ||||| ||| | ||| || |||| | |||
Sbjct 15647 TCCCCGTGAATACCCACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTG 15588
Query 111151 CCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCG 111210
|| || | ||| ||||||| |||| || ||||||| ||||||||| | | |
Sbjct 15587 CCCTCGAGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTG 15528
Query 111211 AAATCACGATC 111221
||||| |||||
Sbjct 15527 AAATCCCGATC 15517
>seq87
Length=94830
Score = 113 bits (124), Expect = 5e-20
Identities = 278/413 (67%), Gaps = 16/413 (4%)
Strand=Plus/Minus
Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564
|||||||||||| || || | || || | |||||||| ||| | ||| ||| | ||
Sbjct 73163 ATCGAAACGACCAGGACGCATAAGCGCCTTATCAAGAACATCAGGTCTGTTGGTACCAGC 73104
Query 11565 AATGACTACAA--TGC-CAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621
| || || | ||| | || | ||| || |||||||| || || |||| ||| ||
Sbjct 73103 GAGAACAACCACTTGCTCGGT---AGTGTTAAATCCGTCCATCTCGGTAAGAATCTGATT 73047
Query 11622 GATCGTCTGTTCACGCTCATCGTTGG-AGGGCATA-----CCA-CCTGCCGAACGCTTCT 11674
|| || ||| || |||||||| | || | ||| ||| || | || |
Sbjct 73046 GAGAGTGGCTTCTCGTTCATCGTTTCCACCGCCGAATGATCCAGCCTTCCCA-CGAGCTT 72988
Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734
| |||| |||||| |||||||||||||| | ||||| || ||| | ||||
Sbjct 72987 TTCCGATAGCGTCGATCTCATCGATGAAGATAATACAAGGCGTGTTCTTTCTTGCCATAG 72928
Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794
||| | ||||| || | | || || ||||| || |||||||| ||||| | |
Sbjct 72927 TGAATAAATCACGCACCCTCGAAGCACCTACACCAACAAACATCTCCACGAATTCGGAAC 72868
Query 11795 CAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853
| | ||| ||||| ||| || || | ||| ||||||||| | || || || ||||
Sbjct 72867 CGGAAACGCTGAA-GAATGGTACTTGAGATTCACCAGCGGTAGCCTTGGCCAGAAGAGKT 72809
Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906
||||| || ||||| | ||||| |||| ||| ||||| || ||||| |||||
Sbjct 72808 TTACCTGTTCCAGGAGGACCAGAAAGAATGGCACCACGAGGAATCTTTGCACC 72756
>seq222
Length=568099
Score = 89.7 bits (98), Expect = 6e-13
Identities = 74/89 (83%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 148152 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 148211
Query 136777 GGGAACAGCTTTTAGA-TATATTTTTTGT 136804
| || ||| | || | | |||||||||
Sbjct 148212 GTGATCAGATATTGCACTTGATTTTTTGT 148240
>seq146
Length=114798
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 89047 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 88988
Query 136777 GGGAACAGCTTT 136788
| || ||| |||
Sbjct 88987 GTGATCAGATTT 88976
>seq287
Length=356727
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 54489 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 54430
Query 136777 GGGAACA 136783
| || ||
Sbjct 54429 GTGATCA 54423
>seq117
Length=215807
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 169452 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 169393
Query 136777 GGGAACA 136783
| || ||
Sbjct 169392 GTGATCA 169386
>seq314
Length=183684
Score = 82.4 bits (90), Expect = 9e-11
Identities = 195/290 (67%), Gaps = 6/290 (2%)
Strand=Plus/Minus
Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCA--CGTGCCTGTTCGAAAA 11740
|| |||| ||| |||||||| ||||| ||||| || | || | ||| |||| |
Sbjct 136415 GCATCAAGCTCGTCGATGAAGACGATGGCAGGTTGTTTTCCTTTCGCGGCTG--CGAATA 136358
Query 11741 GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-A 11799
||||||| |||||||| ||||||||||| ||| | | ||| |||| | | | || |
Sbjct 136357 GTTCACGGACACGCTTAGCTCCAACACCAACGTAAACCTCGTCGAACTCAGATCCCGACA 136298
Query 11800 CACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859
| ||| ||| || ||| | || ||||| | || || ||||| || || || ||
Sbjct 136297 TAAAGAA-GAACGGGACACCGGCTTCGCCAGCAACAGCGCGTGCGAGAAGCGTTTTTCCA 136239
Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAG 11919
|||||||| | ||| |||| | | | || ||| | ||| ||||| | | | |
Sbjct 136238 GTACCAGGAGGACCGACGAGCAAGACACCCTTGGGAAGCTTTCCACCAAGTGTAGCGAAC 136179
Query 11920 CGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969
||| || |||| | ||| || || | |||| ||||||||||| ||
Sbjct 136178 TTCTCGGGACTCTTCAAGAAATCAACCAATTCCTGGAGTTCCTCCTTTGC 136129
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588972260002400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |