Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq487 269 3e-67 seq87 113 5e-20 seq222 89.7 6e-13 seq146 89.7 6e-13 seq287 86.0 7e-12 seq117 86.0 7e-12 seq314 82.4 9e-11 >seq487 Length=114140 Score = 269 bits (298), Expect = 3e-67 Identities = 1126/1751 (64%), Gaps = 61/1751 (3%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556 ||||||||| || ||||| |||||||| |||||||||||| ||||| | ||||| | Sbjct 17235 GTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACGATGGT 17176 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 || || || || ||||||||||||||||| | | ||||||||| | ||||||| Sbjct 17175 ACGCT---GGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATGTT 17119 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCA 109676 || ||||| || || || ||| | | || | | |||||| | | ||||| Sbjct 17118 AGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGACCA 17059 Query 109677 GAGACCGACCTTTTTGAGATCGT-CAACAAG-ATGCTTGTTGACCACGACAAATTCACCA 109734 |||||| | | ||||| | |||||| | | ||| || || ||||||||| Sbjct 17058 GAGACCCATATCGACAAGATCCTTCAACAACCAAGG--GTTAACGACTTGGAATTCACCA 17001 Query 109735 GCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCT 109794 || || |||||| |||||| || | ||||| || ||||||||||| ||| ||| Sbjct 17000 GCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 16941 Query 109795 AGGATTTGTGCAGTGGAA---GCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGA 109851 |||||||| | ||| | || || ||||| ||||| | ||| | |||||| || ||| Sbjct 16940 AGGATTTG---ACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGA 16884 Query 109852 CCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTC 109911 || | | ||| | | | || | | |||| || || || | || | || Sbjct 16883 CCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTA--- 16827 Query 109912 TCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTC 109971 ||| ||| ||||||| ||| || | || | | ||| || ||||| | | | || Sbjct 16826 --ACCTTCC-ACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTC 16770 Query 109972 TCGTACGACCCCTCAACCTCGGCCAACTCG---GATGAAGCCTCTAGTGCCGCATGATAC 110028 ||||| | || | || || | ||| ||||||| || || || || || || Sbjct 16769 TCGTAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAG--TCAAG-GCAGCGTGGTAG 16713 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCA 110088 || ||||| || || || || | | | | ||| | | ||||| || |||| | Sbjct 16712 ATGGTCTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGGGAGACGA 16653 Query 110089 CAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATG 110148 | | || ||||| || |||||||| ||||| | | |||| || | || | Sbjct 16652 AGAGCTAGGAARACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAA 16593 Query 110149 TTAGAGCGTCGAGCAGTTTCT-----ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGA 110203 || || || || || || || ||||| ||||| |||||||| | || | Sbjct 16592 TT---GC-TCTTGC-GTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCA 16538 Query 110204 GATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCT 110263 |||||| ||| || || || || || || | | ||| | | | | || Sbjct 16537 AGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTA-GCTGCCATCA 16479 Query 110264 CCTTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCT 110322 || ||||| || | |||||||||| ||| || | || || |||| |||||| Sbjct 16478 TTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCA 16419 Query 110323 TTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTC 110382 | |||||| | || || || || | ||||| || ||| ||| | |||| Sbjct 16418 GGTGCACAGTATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTC 16359 Query 110383 TTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCC 110442 |||||||| || |||||| |||||||| ||||||||| | ||| | || || || Sbjct 16358 TTCTGATTACTCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCG 16299 Query 110443 GTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCG 110499 || || | || ||| |||| | ||| | | || | ||| || || |||| | | Sbjct 16298 GTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTG-GGCCTTGATGGTCTTGCG--ACCC 16242 Query 110500 AGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAA 110559 ||||| |||||||||| ||| | |||||||||| | ||||| ||||||| | Sbjct 16241 TTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCCTCAAATTCGTCACCGTAAACATCAGCA 16182 Query 110560 AGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTC 110619 ||||| || || ||| || | || | ||| | ||| || |||||| | |||| Sbjct 16181 AGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTC 16122 Query 110620 ATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCA 110679 ||||| || || |||||||| | || |||| || || || ||| | || || | Sbjct 16121 ATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTT 16062 Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG 110739 || ||||| || || || | || || | || ||| | ||||||||| ||||| ||| Sbjct 16061 CCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAG 16002 Query 110740 ACAGCGATGGATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCA 110793 | |||| | || |||| | |||| |||| |||||| | |||||| Sbjct 16001 ATCGCGAAAGCACCAGGGCGCTTATTTCCACCC---TGGTCAACATATCTGGCTGTGTTG 15945 Query 110794 TTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTG 110853 ||||| || | ||||||||||| ||| || | ||| | || ||||| || ||| Sbjct 15944 TTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAA 15885 Query 110854 GACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATT 110913 | | ||||||| || ||||| || || ||| || || || || ||| || Sbjct 15884 GCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATGCCTCCAGCATTCTTGGAGATC 15825 Query 110914 TGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAAT 110972 ||||| ||| |||| ||| | |||||||| || || || |||| || | || Sbjct 15824 ATGGCACAAGTCT-TGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGAT 15766 Query 110973 TAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGC 111032 | ||||| ||||| | || | | || || || || ||||| || || | ||| Sbjct 15765 CAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGC 15706 Query 111033 ATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCT 111090 || || | || |||| ||||||| |||||||| |||| || | ||| Sbjct 15705 GTG--TGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCA 15648 Query 111091 TTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTT 111150 | ||||||||||| | || |||| ||||| ||| | ||| || |||| | ||| Sbjct 15647 TCCCCGTGAATACCCACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTG 15588 Query 111151 CCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCG 111210 || || | ||| ||||||| |||| || ||||||| ||||||||| | | | Sbjct 15587 CCCTCGAGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTG 15528 Query 111211 AAATCACGATC 111221 ||||| ||||| Sbjct 15527 AAATCCCGATC 15517 >seq87 Length=94830 Score = 113 bits (124), Expect = 5e-20 Identities = 278/413 (67%), Gaps = 16/413 (4%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||||||||| || || | || || | |||||||| ||| | ||| ||| | || Sbjct 73163 ATCGAAACGACCAGGACGCATAAGCGCCTTATCAAGAACATCAGGTCTGTTGGTACCAGC 73104 Query 11565 AATGACTACAA--TGC-CAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 | || || | ||| | || | ||| || |||||||| || || |||| ||| || Sbjct 73103 GAGAACAACCACTTGCTCGGT---AGTGTTAAATCCGTCCATCTCGGTAAGAATCTGATT 73047 Query 11622 GATCGTCTGTTCACGCTCATCGTTGG-AGGGCATA-----CCA-CCTGCCGAACGCTTCT 11674 || || ||| || |||||||| | || | ||| ||| || | || | Sbjct 73046 GAGAGTGGCTTCTCGTTCATCGTTTCCACCGCCGAATGATCCAGCCTTCCCA-CGAGCTT 72988 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 | |||| |||||| |||||||||||||| | ||||| || ||| | |||| Sbjct 72987 TTCCGATAGCGTCGATCTCATCGATGAAGATAATACAAGGCGTGTTCTTTCTTGCCATAG 72928 Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 ||| | ||||| || | | || || ||||| || |||||||| ||||| | | Sbjct 72927 TGAATAAATCACGCACCCTCGAAGCACCTACACCAACAAACATCTCCACGAATTCGGAAC 72868 Query 11795 CAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | | ||| ||||| ||| || || | ||| ||||||||| | || || || |||| Sbjct 72867 CGGAAACGCTGAA-GAATGGTACTTGAGATTCACCAGCGGTAGCCTTGGCCAGAAGAGKT 72809 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||||| || ||||| | ||||| |||| ||| ||||| || ||||| ||||| Sbjct 72808 TTACCTGTTCCAGGAGGACCAGAAAGAATGGCACCACGAGGAATCTTTGCACC 72756 >seq222 Length=568099 Score = 89.7 bits (98), Expect = 6e-13 Identities = 74/89 (83%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 148152 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 148211 Query 136777 GGGAACAGCTTTTAGA-TATATTTTTTGT 136804 | || ||| | || | | ||||||||| Sbjct 148212 GTGATCAGATATTGCACTTGATTTTTTGT 148240 >seq146 Length=114798 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 89047 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 88988 Query 136777 GGGAACAGCTTT 136788 | || ||| ||| Sbjct 88987 GTGATCAGATTT 88976 >seq287 Length=356727 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 54489 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 54430 Query 136777 GGGAACA 136783 | || || Sbjct 54429 GTGATCA 54423 >seq117 Length=215807 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 169452 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 169393 Query 136777 GGGAACA 136783 | || || Sbjct 169392 GTGATCA 169386 >seq314 Length=183684 Score = 82.4 bits (90), Expect = 9e-11 Identities = 195/290 (67%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCA--CGTGCCTGTTCGAAAA 11740 || |||| ||| |||||||| ||||| ||||| || | || | ||| |||| | Sbjct 136415 GCATCAAGCTCGTCGATGAAGACGATGGCAGGTTGTTTTCCTTTCGCGGCTG--CGAATA 136358 Query 11741 GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-A 11799 ||||||| |||||||| ||||||||||| ||| | | ||| |||| | | | || | Sbjct 136357 GTTCACGGACACGCTTAGCTCCAACACCAACGTAAACCTCGTCGAACTCAGATCCCGACA 136298 Query 11800 CACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859 | ||| ||| || ||| | || ||||| | || || ||||| || || || || Sbjct 136297 TAAAGAA-GAACGGGACACCGGCTTCGCCAGCAACAGCGCGTGCGAGAAGCGTTTTTCCA 136239 Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAG 11919 |||||||| | ||| |||| | | | || ||| | ||| ||||| | | | | Sbjct 136238 GTACCAGGAGGACCGACGAGCAAGACACCCTTGGGAAGCTTTCCACCAAGTGTAGCGAAC 136179 Query 11920 CGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 ||| || |||| | ||| || || | |||| ||||||||||| || Sbjct 136178 TTCTCGGGACTCTTCAAGAAATCAACCAATTCCTGGAGTTCCTCCTTTGC 136129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588972260002400