Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq487 298 6e-76
seq172 145 9e-30
seq87 89.7 6e-13
>seq487
Length=114140
Score = 298 bits (330), Expect = 6e-76
Identities = 1166/1808 (64%), Gaps = 39/1808 (2%)
Strand=Plus/Minus
Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649
||||| |||||||| |||||||| || || ||||| | | |||||| | |
Sbjct 17327 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 17268
Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709
| |||| ||| |||||| | |||| | ||||| ||| |||||| ||||||
Sbjct 17267 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 17208
Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTG---ATTTCCCACACTGTG 105766
|||||| | || ||||| | || || | | | || | || ||||| || ||
Sbjct 17207 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACG-CTGGGAGATCTCCCAGACAGTC 17151
Query 105767 CGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCC 105826
||| ||| ||||||||| | || || | | || |||||| || ||||| || |
Sbjct 17150 TTGTAAAGAGCCTTGATATCGGCAGGAATGTTAGGGACATTTTGGATGGAACCTCCATCG 17091
Query 105827 TTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACG 105886
|| || | | |||||| | | ||||| ||||| || | ||||| || |
Sbjct 17090 GCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAAC 17031
Query 105887 AGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTC 105946
| ||| || | || || || || ||| | || ||||| || |
Sbjct 17030 AACCAAGGGTTAACGACTTGGAATTCACCAGCCAGGACACGTCGGGAGTAGATATTGGAT 16971
Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006
||||| || || || || || || || | |||||| ||| ||| ||||||||
Sbjct 16970 GTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATA 16911
Query 106007 GGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCC 106066
|| || | | | ||||||||||||||| | | |||||| ||| ||| | ||
Sbjct 16910 GGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCC 16851
Query 106067 CAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGG 106124
||||| | || | | ||| | ||||||| ||||||| |||| ||| | ||||| |
Sbjct 16850 CAGTCCCAAA-GATCGGTAGGTGTAACCTTCC-ACATATCGTATTGGAGCTCTCCTTGTG 16793
Query 106125 ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGG-GCTTCAGCCAATTCA-CAGCT 106182
| | || ||||| || ||||||| || | ||| || |||| || | ||| ||| |
Sbjct 16792 AAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTT-GCAAGCTCAACAGAT 16734
Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242
|| ||| | ||||| || ||||| || ||||| | || | | ||||| ||
Sbjct 16733 GAAGTCAAGGCA-GCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGGTGTTTGGCCTC 16675
Query 106243 ATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCA 106301
|| || |||| | || | | | | || ||||| |||||||| || ||||| |
Sbjct 16674 GGGAGACTCGAATGGG-AGACGAAGAGCTAGGAARACATCGGCGAGACCCTGGACACCAA 16616
Query 106302 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAAT 106358
| ||||||||||||| || | ||| ||| || || ||| ||| || || | |
Sbjct 16615 CAGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGGTAGTAGT 16559
Query 106359 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 106418
| |||| |||| ||| | || || |||| || || || ||||| || |
Sbjct 16558 TGATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCT 16499
Query 106419 CATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 106478
| | || | ||| | | || ||||| || |||| || || | || ||||| |
Sbjct 16498 GAAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGT 16439
Query 106479 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAAC 106538
| |||||||| ||| || | ||| || | || ||||| || | ||||| |
Sbjct 16438 TACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACGATCTCTGTGCAGAGATTGGAGC 16379
Query 106539 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCA 106598
| || || || | ||||| || |||||||| |||||| ||||||||||||||||
Sbjct 16378 TGCGGATGGTACCAAGGTTCTTCTGATTACTCTTACGGTTGCAAGCATCCTTGTAGAGCA 16319
Query 106599 TGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCT 106657
|| | || | || ||||| || || | || ||| || | | ||| | | || | | ||
Sbjct 16318 TGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCT 16259
Query 106658 GGTACAATGGCGTTGG--CCCGTCCCTCC-GCCTCGTACTTTGTGTAGAGGGCTTCAAAC 106714
| |||| ||| ||| | ||| | ||||||||||| ||| || || |||||
Sbjct 16258 TG----ATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCCTCAAAT 16203
Query 106715 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGA 106774
|| ||||| | || | ||||| || || || || || | || | |||| |
Sbjct 16202 TCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTA 16143
Query 106775 CCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 106834
||| || |||||| ||||||||||| || ||||||||||| || | | ||||||||
Sbjct 16142 CCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCG 16083
Query 106835 CTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCC 106894
| | ||| | || || | || ||||| ||| | ||||||||||| | || |||
Sbjct 16082 CGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCA 16023
Query 106895 GCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTT 106951
|||||||||||||| || |||| |||| || || || | ||| | || |
Sbjct 16022 GCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCA 15963
Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011
||||| | |||||| ||| || || || ||||| |||| |||||| | || | ||
Sbjct 15962 ACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCG 15903
Query 107012 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071
||||| || ||| || | | |||| | | |||| | || || || ||
Sbjct 15902 TTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATGCCT 15843
Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131
||||| ||| ||||| ||||| | | ||||| | || ||||||| ||| |
Sbjct 15842 CCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTG 15783
Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191
|||||||| || |||| | |||||| || | || | | |||||| || ||
Sbjct 15782 TCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCA 15723
Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCA 107249
||||||||||| | ||||| || | | |||| ||||||| | ||||||||| |
Sbjct 15722 AAGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGA 15665
Query 107250 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGG 107309
|| ||||| || |||||||| || || | ||||| | ||| | ||||| ||| |
Sbjct 15664 TAGCACTCTCAATATCATCCCCGTGAATACCCACAGCCACTCTCATGATCATGTGTTGTG 15605
Query 107310 GTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGA 107368
| ||| | |||| ||||| || |||| || | || ||||||| || ||||
Sbjct 15604 GACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGATC-TCTCAAGAGTCTTGAAT 15546
Query 107369 CCAAAGTA 107376
||||||||
Sbjct 15545 CCAAAGTA 15538
>seq172
Length=386049
Score = 145 bits (160), Expect = 9e-30
Identities = 304/448 (68%), Gaps = 4/448 (1%)
Strand=Plus/Plus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
||||| | || |||||||| |||||||||||||| || ||||| ||||| |||||
Sbjct 24900 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATG 24959
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAA-ATGGGTGGCACCCCAACTTGTTTGAGGAGACG 117104
||||| ||||| || | || || | | | || | | ||| |||||
Sbjct 24960 AAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG-GAGCAGACG 25018
Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164
||| | || |||||||||| | |||| ||| |||||| |||| ||| |||
Sbjct 25019 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 25078
Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224
|| || || || | |||| ||| ||| |||||||| ||||| | | | | | ||
Sbjct 25079 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTTG 25138
Query 117225 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAACTCCT 117283
|| | || | | || | || ||| ||| | | || |||||| ||
Sbjct 25139 GACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGAACAAGAGGCA-GGCAAAGTCGG 25197
Query 117284 GGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGAC 117343
||||||||| || || ||||| || || || || |||||| || |||||||| ||||
Sbjct 25198 TGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGAC 25257
Query 117344 CCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 117403
| |||||||||||||| | |||| | |||||| |||||||||||||||||||| |||
Sbjct 25258 CACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAG 25317
Query 117404 ACGCAAACGCAAAAAGGCGCTCGGCGAA 117431
||||| |||| || |||| |||||
Sbjct 25318 CGGCAAAGGCAACGAGACGCTGAGCGAA 25345
>seq87
Length=94830
Score = 89.7 bits (98), Expect = 6e-13
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 9363 TTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 9422
||||| | || || |||||||| ||||||| |||||| || || | | || ||
Sbjct 72988 TTTCCGATAGCGTCGATCTCATCGATGAAGATAATACAAGGCGTGTTCTTTCTTGCCATA 72929
Query 9423 TCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9482
|| | ||| || ||||| || || |||||||||||||||||||| || | |
Sbjct 72928 GTGAATAAATCACGCACCCTCGAAGCACCTACACCAACAAACATCTCCACGAATTCGGAA 72869
Query 9483 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9542
||||| || ||| || || | ||||||||| || | || ||| |||||||
Sbjct 72868 CCGGAAACGCTGAAGAATGGTACTTGAGATTCACCAGCGGTAGCCTTGGCCAGAAGAGKT 72809
Query 9543 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595
||||| || || || ||| | || | |||||| || |||||||| || ||
Sbjct 72808 TTACCTGTTCCAGGAGGACCAGAAAGAATGGCACCACGAGGAATCTTTGCACC 72756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589977053621920
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