Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq116 136 9e-27
seq359 134 3e-26
seq344 118 2e-21
seq487 86.0 1e-11
>seq116
Length=121463
Score = 136 bits (150), Expect = 9e-27
Identities = 141/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || |||||||| ||||| || || || ||||| |||| || || | |||||||||
Sbjct 20337 ACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCG 20396
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| || |||||||| || ||||||||||| || |||||||| || ||||| ||
Sbjct 20397 AGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 20456
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || || || || ||| || || || ||||||| |||||
Sbjct 20457 ATCTTGGACTTGACGTTATCGATAGTATCGGAAGACTCTACCTCTAGGGTAATTGTCTTG 20516
Query 195112 CCTGT 195116
|| ||
Sbjct 20517 CCCGT 20521
>seq359
Length=494912
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|||||||| ||||| |||| |||||||| ||||| ||||||||||| || ||||||||
Sbjct 437947 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 437888
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| ||||| ||||| || || || || || ||||| || || || |||||| || |||
Sbjct 437887 AAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 437828
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|| || || || || || || ||||||| |||||||| || | |||||| |||||
Sbjct 437827 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 437769
>seq344
Length=396322
Score = 118 bits (130), Expect = 2e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || |||||||| || || || || || |||||||| | ||||| | || || |||
Sbjct 110638 ACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCG 110697
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | || || ||||| || |||||||| || ||||||||
Sbjct 110698 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGG 110757
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || || ||||||||| || || || || || | |||||
Sbjct 110758 ATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTG 110817
Query 195112 CCTGT 195116
|| ||
Sbjct 110818 CCGGT 110822
>seq487
Length=114140
Score = 86.0 bits (94), Expect = 1e-11
Identities = 188/279 (67%), Gaps = 2/279 (1%)
Strand=Plus/Plus
Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648
|||||||| | |||| | | ||||| ||||||||| | || | | ||||| |||
Sbjct 16090 TTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAAGAATGGTACATGG 16149
Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708
| || | || ||||| || || || |||| ||||||||| ||| ||| || |||
Sbjct 16150 ACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACGGTGACGAATTTGAG 16209
Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGA 160767
||||||| || | ||||| ||| || ||| | | || | | | |||||||| |
Sbjct 16210 GCTCTTTACGAGAAGTACGAGGCAGAAGGCAAGGGTCGCAA-GACCATCAAGGCCCAGAA 16268
Query 160768 ACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAA 160827
|| ||| | |||||| | || ||| |||| || | || || || |||||
Sbjct 16269 GCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCCTTTCATGCTCTACAA 16328
Query 160828 GGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866
|||||| | || |||||||| ||||||||| ||||
Sbjct 16329 GGATGCTTGCAACCGTAAGAGTAATCAGAAGAACCTTGG 16367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109474378661636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |