Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq172 91.5 2e-13 >seq172 Length=386049 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 || || || || || | ||| |||||||| || | || || |||||||||||||| || Sbjct 25227 TCGTTGGAGAAGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCG 25286 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 ||||| || || ||||| ||||| || || || ||||| ||||| || | | | | Sbjct 25287 AATGAACCGGAGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAAT 25346 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172 ||| || |||| || |||||| | | ||||| || |||||||| || Sbjct 25347 GTAGAGTCCTTATCTTGGATCCATCTTACGGCCCAGTCGGCCTTCTTCTT 25396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105230609120