Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq185 138 9e-27 seq125 105 5e-17 >seq185 Length=385050 Score = 138 bits (152), Expect = 9e-27 Identities = 462/712 (65%), Gaps = 13/712 (2%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||||| |||||||| ||||||| ||||| | ||||| || | || || ||| | Sbjct 61775 GCTCTCCGTCGTCTCCGAACTGCATGCGAGCGTGCCAAGCGTACCCTCTCTTCTTCCGCA 61834 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 ||||| | ||||| | || || | |||||||| ||||||| | || | || | Sbjct 61835 CAAACTTCCATTGAGATTGACTCCCTGTTTGAGGGTATTGATTTCTACACATCCATCACC 61894 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | || | ||| || || | || |||||||| | || | ||||| || Sbjct 61895 CGTGCTAGATTCGAGGAGCTCTGCCAGGATCTCTTCCGTTCTACCACCACCCCAGTCGAC 61954 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | || | ||| | |||||||| || ||||| || || || || || | || || Sbjct 61955 CGTGTCCTCGCCGATGCCAAGATTGACAAGTCCAAGGTTCACGAGATCGTCTTGGTCGGA 62014 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAA 552191 |||||||| | || || || | ||| | | | | | ||| |||||||| || Sbjct 62015 GGATCTACCCGTATCCCACGTATCCA-GAA--GCTCATTACCGATTACTTCAATGGCAAG 62071 Query 552192 AAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249 | || |||| | || || |||||||||||||| || ||||||||| | || | Sbjct 62072 GAGCCCAAC--AAGTCCATAAACCCTGATGAGGCTGTTGCGTACGGTGCCGCAGTCCAGG 62129 Query 552250 CAGCTATTCTTTCTGGACAAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATG 552306 | || ||||| ||||| | || | || || | || || | || | || | |||| Sbjct 62130 CTGCCATTCTATCTGGTGACACTTCATCTAAGAGCACTAATGAGATCCTTCTCCTCGATG 62189 Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366 || | || || ||||| ||| | || || | ||| || ||||| || || || | Sbjct 62190 TTGCCCCGCTCTCTCTCGGTATTGAGACTGCTGGTGGACAGATGACCAAGCTCATTCCCA 62249 Query 552367 GAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAA 552426 |||| || || || || || || ||| || || ||||| | || ||||| ||| Sbjct 62250 GAAACACCACCATCCCAACCAAGAAGTCTGAGGTTTTCTCTACCTTCTCCGATAACCAAC 62309 Query 552427 CTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAAC 552486 ||| |||| || ||| | ||||| ||||| | || ||| ||||| || ||| | Sbjct 62310 CTGGTGTTCTCATCCAAGTCTTTGAGGGAGAGCGTCAACGCACGAAAGACAACAATTTGC 62369 Query 552487 TTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAG 552546 | || | || | | ||||| || || || |||||||| || || || || || | Sbjct 62370 TGGGCAAGTTCGAGCTCACTGGTATCCCACCCGCCCCTCGTGGTGTCCCACAGATCGAGG 62429 Query 552547 TTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 |||| || ||| |||||||||| ||||| |||| || ||||| ||| || Sbjct 62430 TTACCTTTGATCTCGATGCCAACGGAATCATGAACGTTTCTGCTCTTGAGAA 62481 Score = 109 bits (120), Expect = 4e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||||||||| || || | |||||| || ||||||||||| || ||||| || | || Sbjct 61348 ACTGTACCAGCTTACTTCACTGACTCCCAGCGTCAAGCTACAAAGGATGCCGGTCTGATC 61407 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || |||||||| || || ||||| || || ||||| ||||| |||| || || Sbjct 61408 GCCGGTCTCAATGTTCTCCGAATCATCAACGAGCCAACTGCCGCTGCCATTGCCTACGGT 61467 Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 ||||| || | ||| || | |||||| |||||||| ||| ||| || Sbjct 61468 CTTGACAAGAAGGTTGAGGGTGAGCGTAATGTCCTCATCTTCGATCTTGGTGG 61520 >seq125 Length=220014 Score = 105 bits (116), Expect = 5e-17 Identities = 116/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 550379 GTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| |||||| ||| | | || || || ||||| || || || || || ||| || Sbjct 158330 GTTGGGCAAGAAAGTTGCCAAGGCTGTCATCACTGTCCCTGCCTACTTCAACGACAACCA 158271 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 ||||||||||||||| |||||||| |||||||| || || ||||| || || ||||| Sbjct 158270 ACGTCAAGCTACTAAGGATGCTGGTGCCATTGCTGGTCTCAACGTTCTCCGCATCATCAA 158211 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 || || ||||||||||| |||| || || || Sbjct 158210 CGAGCCAACTGCTGCTGCTATTGCCTACGGTCT 158178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029269134668920