Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq185 138 9e-27
seq125 105 5e-17
>seq185
Length=385050
Score = 138 bits (152), Expect = 9e-27
Identities = 462/712 (65%), Gaps = 13/712 (2%)
Strand=Plus/Plus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
||||| |||||||| ||||||| ||||| | ||||| || | || || ||| |
Sbjct 61775 GCTCTCCGTCGTCTCCGAACTGCATGCGAGCGTGCCAAGCGTACCCTCTCTTCTTCCGCA 61834
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
||||| | ||||| | || || | |||||||| ||||||| | || | || |
Sbjct 61835 CAAACTTCCATTGAGATTGACTCCCTGTTTGAGGGTATTGATTTCTACACATCCATCACC 61894
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074
| || | ||| || || | || |||||||| | || | ||||| ||
Sbjct 61895 CGTGCTAGATTCGAGGAGCTCTGCCAGGATCTCTTCCGTTCTACCACCACCCCAGTCGAC 61954
Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134
| || | ||| | |||||||| || ||||| || || || || || | || ||
Sbjct 61955 CGTGTCCTCGCCGATGCCAAGATTGACAAGTCCAAGGTTCACGAGATCGTCTTGGTCGGA 62014
Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAA 552191
|||||||| | || || || | ||| | | | | | ||| |||||||| ||
Sbjct 62015 GGATCTACCCGTATCCCACGTATCCA-GAA--GCTCATTACCGATTACTTCAATGGCAAG 62071
Query 552192 AAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249
| || |||| | || || |||||||||||||| || ||||||||| | || |
Sbjct 62072 GAGCCCAAC--AAGTCCATAAACCCTGATGAGGCTGTTGCGTACGGTGCCGCAGTCCAGG 62129
Query 552250 CAGCTATTCTTTCTGGACAAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATG 552306
| || ||||| ||||| | || | || || | || || | || | || | ||||
Sbjct 62130 CTGCCATTCTATCTGGTGACACTTCATCTAAGAGCACTAATGAGATCCTTCTCCTCGATG 62189
Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366
|| | || || ||||| ||| | || || | ||| || ||||| || || || |
Sbjct 62190 TTGCCCCGCTCTCTCTCGGTATTGAGACTGCTGGTGGACAGATGACCAAGCTCATTCCCA 62249
Query 552367 GAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAA 552426
|||| || || || || || || ||| || || ||||| | || ||||| |||
Sbjct 62250 GAAACACCACCATCCCAACCAAGAAGTCTGAGGTTTTCTCTACCTTCTCCGATAACCAAC 62309
Query 552427 CTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAAC 552486
||| |||| || ||| | ||||| ||||| | || ||| ||||| || ||| |
Sbjct 62310 CTGGTGTTCTCATCCAAGTCTTTGAGGGAGAGCGTCAACGCACGAAAGACAACAATTTGC 62369
Query 552487 TTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAG 552546
| || | || | | ||||| || || || |||||||| || || || || || |
Sbjct 62370 TGGGCAAGTTCGAGCTCACTGGTATCCCACCCGCCCCTCGTGGTGTCCCACAGATCGAGG 62429
Query 552547 TTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598
|||| || ||| |||||||||| ||||| |||| || ||||| ||| ||
Sbjct 62430 TTACCTTTGATCTCGATGCCAACGGAATCATGAACGTTTCTGCTCTTGAGAA 62481
Score = 109 bits (120), Expect = 4e-18
Identities = 128/173 (74%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
||||||||||| || || | |||||| || ||||||||||| || ||||| || | ||
Sbjct 61348 ACTGTACCAGCTTACTTCACTGACTCCCAGCGTCAAGCTACAAAGGATGCCGGTCTGATC 61407
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
|| || || |||||||| || || ||||| || || ||||| ||||| |||| || ||
Sbjct 61408 GCCGGTCTCAATGTTCTCCGAATCATCAACGAGCCAACTGCCGCTGCCATTGCCTACGGT 61467
Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581
||||| || | ||| || | |||||| |||||||| ||| ||| ||
Sbjct 61468 CTTGACAAGAAGGTTGAGGGTGAGCGTAATGTCCTCATCTTCGATCTTGGTGG 61520
>seq125
Length=220014
Score = 105 bits (116), Expect = 5e-17
Identities = 116/153 (76%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 550379 GTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437
||||| |||||| ||| | | || || || ||||| || || || || || ||| ||
Sbjct 158330 GTTGGGCAAGAAAGTTGCCAAGGCTGTCATCACTGTCCCTGCCTACTTCAACGACAACCA 158271
Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497
||||||||||||||| |||||||| |||||||| || || ||||| || || |||||
Sbjct 158270 ACGTCAAGCTACTAAGGATGCTGGTGCCATTGCTGGTCTCAACGTTCTCCGCATCATCAA 158211
Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACT 550530
|| || ||||||||||| |||| || || ||
Sbjct 158210 CGAGCCAACTGCTGCTGCTATTGCCTACGGTCT 158178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029269134668920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |