Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq172 140 6e-28 seq487 132 9e-26 >seq172 Length=386049 Score = 140 bits (154), Expect = 6e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 |||||||||||| |||| | |||||||| ||| ||||||| ||||||||||| || Sbjct 25184 GCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAG 25243 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||| ||||| | || | || || | |||||| || | ||||| || || |||||||| Sbjct 25244 ACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAA 25303 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 ||| ||||| || || || || || ||| | || |||| | || || ||| ||| Sbjct 25304 GATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTCCTTATCTTG 25363 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 |||||| | |||||||| ||||||||||||||||| || Sbjct 25364 GATCCATCTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGG 25405 Score = 93.3 bits (102), Expect = 8e-14 Identities = 171/250 (68%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||| ||||||||||||||| | |||||| | Sbjct 25533 TCTCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAGCGAGCCTCAGGTA 25592 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||| || ||| | ||||| |||||| || ||||| ||||| || || || || |||| Sbjct 25593 CCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATTCCGTCAGATGCAG 25652 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | ||||| ||||| || || | || | | ||| | || |||| |||| Sbjct 25653 CGAAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTGAGTCTGTTGTTCC 25712 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | || | || ||| ||| || | |||||| | |||||||| || || ||| | Sbjct 25713 AGTCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAATGAAGCCTCTGCCT 25772 Query 48666 TTTTGTACAT 48675 | |||||||| Sbjct 25773 TCTTGTACAT 25782 >seq487 Length=114140 Score = 132 bits (146), Expect = 9e-26 Identities = 650/1021 (64%), Gaps = 34/1021 (3%) Strand=Plus/Minus Query 213180 CCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAAT 213239 ||||||| ||| || ||||| || | || |||||||| ||||||||| || || Sbjct 16760 CCATGCTGCTTTGCAAGCTCAACAGATGAAGTCAAGGCAGCGTGGTAGATGGTCTCGAAG 16701 Query 213240 ATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTT-GGAA 213298 |||| ||||||| | |||||||| || ||| ||| || | | | | | | |||| Sbjct 16700 ATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGGGAG-ACGAAGAGCTAGGAA 16642 Query 213299 CACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-G 213357 ||||| || || |||||||| || | | || |||||||| | | || |||| | Sbjct 16641 RACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATTGCTCTTGCG 16582 Query 213358 AGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCA 213417 || ||| | ||||| ||||| ||||||||||||||| | ||| | | | Sbjct 16581 TGC-CTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGACAA 16523 Query 213418 CTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGC------A 213471 | | | ||||| | || | || || || |||||| || || | | Sbjct 16522 CCTGGCAGACATCGTGAAGCTTCT---GA---AAGTCGTAGCTGCCATCATTTTGGTTGA 16469 Query 213472 CAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGT 213531 | | || || || | |||| ||| ||||| || ||||| | || | || Sbjct 16468 CGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGT 16409 Query 213532 ACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTG 213591 | || | |||||| ||||| || ||| || |||||||| || ||||||| || || Sbjct 16408 ATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTAC 16349 Query 213592 ACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACA 213651 ||| |||| || |||||||||||||||| | ||| |||||||| || | | Sbjct 16348 TCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCT 16289 Query 213652 CCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTA- 213710 | || || | ||| || | | |||||||| | || | | | | | | Sbjct 16288 CGAGGATGGAGTACCAAAGCTTCTGGGCCTTGATG----GTCTTGCGACCCTTGCCTTCT 16233 Query 213711 GCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA 213770 |||||||||| ||||| || | | ||||||| || | || | || || || Sbjct 16232 GCCTCGTACTTCTCGTAAAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGG 16173 Query 213771 CAGGATGCGGGACACATGAGGCTCCA-GTCCCCGTCATCTCTGACTCTCTGCATGAACAG 213829 || ||| ||||| || |||| || || || |||| || | || |||||| || Sbjct 16172 CACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCA-ACACGCTTCATGAAGAG 16114 Query 213830 GTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTT 213889 || || | ||| || ||| ||| || || | | | || ||| ||| ||| Sbjct 16113 ATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTT 16054 Query 213890 TTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAA 213949 || || ||||| || || ||||||| || |||||||| ||||| | |||||| || || Sbjct 16053 CTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAA 15994 Query 213950 GGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCG 214006 || || || | ||| || |||||||| || ||||| ||||||| | || Sbjct 15993 AGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCG 15934 Query 214007 CAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGC 214066 || | || || | |||||||| | ||||| || || || || || | || | ||| Sbjct 15933 GAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGC 15874 Query 214067 CCTCAGGTTGCTCATGGAGA----GCCCTATGCCACCGGCGTACTTGGAGATCATGGCGC 214122 | || | || |||| | | || ||||| || || | ||||||||||||||| | Sbjct 15873 AC---GGATTCTG-TGGACATTCAGACCGATGCCTCCAGCATTCTTGGAGATCATGGCAC 15818 Query 214123 AGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGC 214182 | | | | ||| || || ||| | || ||||| || | | || | |||||||| Sbjct 15817 AAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGC 15758 Query 214183 A 214183 | Sbjct 15757 A 15757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931526884766720