Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq487 223 6e-53 seq172 125 1e-23 >seq487 Length=114140 Score = 223 bits (246), Expect = 6e-53 Identities = 802/1234 (65%), Gaps = 67/1234 (5%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 |||| ||||||||||||||||||||| |||||| ||||||| |||||||||||| Sbjct 16730 GTCAAGGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCGGGA 16671 Query 221477 GAAGTGAAGGGCATACGCAGCATCT-GAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 || ||| || | ||| || | || | || || ||||| || ||||| || || | | | Sbjct 16670 GACTCGAATGGGAGACGAAG-AGCTAGGAARACATCGGCGAGACCCTGGACACCAACAGC 16612 Query 221536 GATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 || || ||||| | ||| | || || || || || || |||||| ||| Sbjct 16611 AATAGGTCTGTGACGGAAATTGCTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTC 16552 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | ||||| | |||| || || | || ||| |||||||| | Sbjct 16551 GATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTC 16492 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 | | || ||| || | || | || ||| || |||| || Sbjct 16491 GTA---------GCTGCCATCATTTTGG---TTGACGTAAGTTGGGAGAGCAAGAGAAGC 16444 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTAT-----GATCTCTGTACAG 221770 || |||||| || || |||||||| ||| || |||| ||||||||| ||| Sbjct 16443 CAAGTTACAAACAGCGACCTCGTCA-----GGTGCACAGTATTCAACGATCTCTGTGCAG 16389 Query 221771 AGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCC 221830 || ||| || |||||| || |||| || |||||| ||| || ||| ||| ||| Sbjct 16388 AGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTACGGTTGCAAGCATCC 16329 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 ||||||||||| || || || ||||| || ||| | || || || ||| || Sbjct 16328 TTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGC 16269 Query 221891 TCTCTGGCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGT 221943 | ||||| || | ||| | |||| || | ||||| ||| || || Sbjct 16268 T-TCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTC-------GT 16217 Query 221944 ATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACA 222003 | ||||| | |||| | |||||||| | || | || || || ||| | ||| || Sbjct 16216 AAAGAGCCT--CAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCA 16159 Query 222004 CATCAGACTCCA-GTGC--TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060 |||||| |||| || | || || || || | || ||||||||| || || ||||| Sbjct 16158 CATCAGTGTCCATGTACCATTCTTCTCA---ACACGCTTCATGAAGAGATCTGGAATCCA 16102 Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATC 222120 || || | |||||||| | | || |||||| |||| ||| || | ||||| Sbjct 16101 TAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATC 16042 Query 222121 CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCG 222180 | |||||||| | ||||||||||| ||||| || |||| || | ||| || || || Sbjct 16041 AAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCG 15982 Query 222181 CTTGTTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAAGGGTCGGT 222238 ||| || |||||||| | || ||| ||| | | | |||||| | || || | || Sbjct 15981 CTTATTTCCACCCTGGT-CAACAT-ATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGA 15924 Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTA 222298 || | |||||||| ||||| ||||| |||||| || || ||| | || | Sbjct 15923 ACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCAC---GGATT 15867 Query 222299 CT---GGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGA 222355 || | || || ||||| || || || | || ||||||||||| || |||||||| Sbjct 15866 CTGTGGACATTCAGACCGATGCCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGA 15807 Query 222356 GTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATC 222415 || || || || || ||| ||||||||| | || | || || || || || | Sbjct 15806 GTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGT 15747 Query 222416 TGAGATT-TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT 222474 || | || |||| | | |||| ||| || || ||| |||||||||||||| || Sbjct 15746 TGTGCTTGTGGT-GTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCT 15688 Query 222475 AGACATCAGATCGTACGTCTC--TACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATG 222532 ||||||| || ||| ||||| || ||||| | || | ||||||||||| || Sbjct 15687 GGACATCAAATTGTATGTCTCGATAGCACTCT--CAATATCATCCCCGTGAATACCCACA 15630 Query 222533 GCGCATCTCATGTACATGTACTGGGGCC--TCTCCACAGGACCCTTGGAGCTGGAGAGCA 222590 || ||||||| ||||| || || | || || || | ||| ||||| | Sbjct 15629 GCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAGA--A 15572 Query 222591 GGTACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 |||| ||| | || ||||||||||| |||||||| Sbjct 15571 GGTATGATCTCTCAAGAGTCTTGAATCCAAAGTA 15538 >seq172 Length=386049 Score = 125 bits (138), Expect = 1e-23 Identities = 335/515 (65%), Gaps = 7/515 (1%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||||||| |||||| |||||| | | |||||| | || | |||| Sbjct 25405 CCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGATAAGGACTCTACA 25346 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || | |||| || || |||||||| ||||| ||||| ||||| ||| |||||| || Sbjct 25345 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 25286 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || | || |||||| | ||| || || ||||| || || ||| ||||||||| Sbjct 25285 GCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 25226 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 |||||| | | ||||| |||||||||| || ||||||||||| | | | | |||| Sbjct 25225 CTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTC---CCAC 25169 Query 26050 TTGCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGAT 26108 ||| ||| || |||| | | ||| | | || | |||||||| ||||| Sbjct 25168 TTGAACCATCGTCC-AAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGAT 25110 Query 26109 CGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACT 26168 |||| | ||||| | ||||||||| | Sbjct 25109 CGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTT 25050 Query 26169 CATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAG 26228 |||| ||||||||||||| || || || | |||||| | || || || | Sbjct 25049 GATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAA 24990 Query 26229 ACTCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGA 26287 ||| ||| |||| ||||| |||||||| ||||| ||||| || | | || |||| Sbjct 24989 GTATTACAAGTCCGCC-AACCCATTCGACTTCATGGAGAACATCTCCCTTGCCGGAAAGA 24931 Query 26288 CCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 |||||||||| || ||| | |||| |||||| ||| Sbjct 24930 CCAACTTCTTCGAGAAGCGTGTCGCCGACTACCAA 24896 Score = 102 bits (112), Expect = 2e-16 Identities = 165/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | ||| ||||||||||||||| ||||||||| Sbjct 25791 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 25732 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAG---CATTTTCTCAAG 25593 ||||||| | ||| |||| || | ||| ||||| || | ||| || Sbjct 25731 TCCAAGGATCTCCACGACTGGAACAACAGACTCAATGACGATGAGAGATACTTTGTCTCC 25672 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | |||||||| || || ||||| || || || |||||||| || ||| || Sbjct 25671 CACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTCAACGAGAACCTCCTGGAGCGA 25612 Query 25654 TTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | | || || || |||| | ||||| || |||||||| ||||| || Sbjct 25611 TTCAGCGGAGAGGTCCAGGTACCT-GAGGCTCGCTGCTTCTACGGGTTCCAAAT 25559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928838901835520