Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq117 107 1e-17 seq359 100 2e-15 seq344 96.9 2e-14 >seq117 Length=215807 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||| || |||||||| || || ||||| |||||||| || ||||| ||||| || || Sbjct 53532 TTACCGTCCCAGCATACTTCAACGATTCGCAACGTCAGGCTACTAAGGATGCTGGTCAAA 53473 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 ||||||||||||| ||| | ||| | | || || ||||| || ||||| |||||||||| Sbjct 53472 TTGCAGGTCTTAACGTTCTCCGTGTAGTCAACGAGCCAACCGCTGCCGCTCTTGCTTATG 53413 Query 474864 GTCTTGATAAGAATTCTGACAA 474885 | | || ||| || ||||| Sbjct 53412 GGTTGGAGAAGGATGAAGACAA 53391 >seq359 Length=494912 Score = 100 bits (110), Expect = 2e-15 Identities = 126/172 (73%), Gaps = 6/172 (3%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||||| | ||| || || ||||||||||| || || | |||||| || || || || Sbjct 437926 AGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCGGGGGGG 437867 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725 ||||| |||||||| || ||||| |||||| ||||| ||||| | | || | Sbjct 437866 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATCGTATCGGAG---GACTCT 437810 Query 480726 ---TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTGGAACG 480774 || |||||||| || || ||||||||||| || ||||| | ||||||| Sbjct 437809 ACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAAGCTATGGAACG 437758 >seq344 Length=396322 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || || |||||||| ||| || || | |||||||||| | || Sbjct 110105 ACGAAGGCGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGT 110164 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || | ||||||||||| ||||| || | || || || || || || || Sbjct 110165 ACGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACC 110224 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || |||||| ||||| ||||||||||||| || | | || | Sbjct 110225 CTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGA-CCTCGA 110283 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| |||||||| |||||||| || Sbjct 110284 GTGTGATTGTCTTTCCGGTCAGAGTCTTGACGAAAATCTG 110323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268157409415184