Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq487 109 3e-19
>seq487
Length=114140
Score = 109 bits (120), Expect = 3e-19
Identities = 268/400 (67%), Gaps = 6/400 (2%)
Strand=Plus/Minus
Query 25914 CATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTC 25973
|||| | |||||| || ||| || | |||||||||||| | || || || | ||| |
Sbjct 16141 CATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGC 16082
Query 25974 TCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTG 26033
|| | | ||| || |||||||| |||||| ||||| | ||| ||||| | ||| |
Sbjct 16081 GAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAG 16022
Query 26034 AGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTA 26093
||||||||| || | ||||| || ||| ||| | || |||||| || || |
Sbjct 16021 CGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAA 15962
Query 26094 CGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAAT-CCG 26152
| ||||| || || | ||||||||| | ||| ||||| ||| | |||| | | |||
Sbjct 15961 CATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAAC-AATACCGTTGGAGTTCCCG 15903
Query 26153 TTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCA 26212
||||||| | ||| | | ||| || | | || ||| ||| | |||||| ||
Sbjct 15902 TTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATGCCT 15843
Query 26213 CCAGCCCATTTTGAAATAGCTGCACAA-TC-TGAAACTGTATCGAAAATTCCTTTTATGC 26270
||||| || || || |||||| || ||| | |||||| |||| || | || |
Sbjct 15842 CCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGA--GTATCGTAAATACCGTCGATAC 15785
Query 26271 TATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTG 26310
| || | ||||| | | || || || ||||| | |||
Sbjct 15784 TGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTG 15745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253038433366100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |