Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq487 298 7e-76 seq172 145 9e-30 >seq487 Length=114140 Score = 298 bits (330), Expect = 7e-76 Identities = 1167/1808 (65%), Gaps = 39/1808 (2%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 |||||||| |||| || ||||||| || | || |||| || ||||| |||| | Sbjct 15538 TACTTTGGATTCAAGACTCTTGAGA-GATCATACCTTCTCCGTCTCGAGGGCAAGATTGC 15596 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| ||||| ||||| ||||| | || || | || || |||||||| || ||||| Sbjct 15597 CGAACGTCCACAACACATGATCATGAGAGTGGCTGTGGGTATTCACGGGGATGATATTGA 15656 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 || | ||||||||| | ||||||| |||| | | || ||||| | ||| Sbjct 15657 GAGTGCTATCGAGACATACAATTTGATGTCCAGCAAGTACTTTACA--CACGCGTCTCCA 15714 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 |||||||| || || |||||| | | || | || |||||| | |||| || Sbjct 15715 ACCCTCTTTGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGACATG 15774 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||||||| ||| ||||||| || | ||||| | | ||||| ||||| ||| Sbjct 15775 AAGGAGGACAGTATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGATCTCCAAG 15834 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 ||||| || || || || | |||| | | |||| | | || ||| Sbjct 15835 AATGCTGGAGGCATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTACATTGCT 15894 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || ||||| || | || | |||||| |||| ||||| || || || ||| |||||| Sbjct 15895 GGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACAGCC 15954 Query 75563 CGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCA 75619 | ||||| | || | || | ||| || | ||||| ||||| | || ||| Sbjct 15955 AGATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAGCCA 16014 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCT 75679 ||||| || ||| || | ||||||||||| | ||| ||||| || | || || | | Sbjct 16015 TGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAAGTT 16074 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | | |||||||| | | || ||||||||||| || ||||||||||| |||||| Sbjct 16075 CGCGCTCGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAG 16134 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 || |||| |||| | || | || || || || || ||||| | || | Sbjct 16135 AAGAATGGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTAC 16194 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAG-AGGAGGGTAGAG--CCAATGCG 75856 ||||| || ||||| || || ||| ||||| || | || ||| || | ||| | Sbjct 16195 GGTGACGAATTTGAGGCTCTTTACGAGAAGTACGAGGCAGAAGGCAAGGGTCGCAA---G 16251 Query 75857 ACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAAC 75915 || | | || | | || | ||||| | | || ||| | | || || ||||| |||| Sbjct 16252 ACCAT-CAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAA 16310 Query 75916 ACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAAC 75975 || | ||||| |||||||||||||| ||| |||||||| || ||||| | || || Sbjct 16311 CCCTTTCATGCTCTACAAGGATGCTTGCAACCGTAAGAGTAATCAGAAGAACCTTGGTAC 16370 Query 75976 AATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGC 76035 ||| ||||| ||||| ||||| || || | || ||| | || ||| || Sbjct 16371 CATCCGCAGCTCCAATCTCTGCACAGAGATCGTTGAATACTGTGCACCTGACGAGGTCGC 16430 Query 76036 TGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTT 76095 |||||| || ||||| || | || || |||| || ||||| || | | ||| | Sbjct 16431 TGTTTGTAACTTGGCTTCTCTTGCTCTCCCAACTTACGTCAACCAAAATGATGGCAGCTA 16490 Query 76096 TGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCAT 76155 || | | | || ||||| || || || |||| || || | ||| |||| Sbjct 16491 CGACTTTCAGAAGCTTCACGATGTCTGCCAGGTTGTCGTGAAGAACTTGAACAAGATCAT 16550 Query 76156 TGACAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 |||| || | || || ||| ||| || || ||| ||| | || |||||||| Sbjct 16551 CGACATCAACTACTACCCTGTTCCCGAG---GCACGCAAGAGCAATTTCCGTCACAGACC 16607 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT-TTTGTGCCGCTACGCATTTG 76271 ||||| | | ||||| || |||||||| ||||| || | | | | || | |||| | Sbjct 16608 TATTGCTGTTGGTGTCCAGGGTCTCGCCGATGTYTTCCTAGCTCTTCGTCT-CCCATTCG 16666 Query 76272 ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331 | || || ||||| | | || | ||||| || ||||| || ||||| | || Sbjct 16667 AGTCTCCCGAGGCCAAACACCTCAACATCCAGATCTTCGAGACCATCTACCACGC-TGCC 16725 Query 76332 TGGAGGCGAGTTG-TGAATTGGCTGAAGC-CCAAGGTTCCTATGAGACATTTGAGGGTTC 76389 | || | || ||| | || |||| || ||| | || ||||||| || ||||| Sbjct 16726 TTGACTTCATCTGTTGAGCTTGC-AAAGCAGCATGGTACTTACGAGACATACGAAGGTTC 16784 Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--GCTCAAC 76447 || || || ||||| | ||| || | ||||||| ||||||| | ||| | | || Sbjct 16785 CCCAGCTTCACAAGGAGAGCTCCAATACGATATGT-GGAAGGTTACACCTACCGATC-TT 16842 Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507 | ||||||| | ||| ||| |||||| || | ||||||||||||||| | | Sbjct 16843 TGGGACTGGGCCACCTTGAAGCAACAAATCAAGCAGCACGGTCTTCGTAACAGTTTGCTC 16902 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 | || || |||||||| ||| ||| |||||| | || || || || || || Sbjct 16903 GTTGCTCCTATGCCAACTGCCAGTACCAGTCAAATCCTTGGCTTCAACGAGTGTTTCGAG 16962 Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627 ||||||||| | || |||||| || | ||| || ||||| || | || ||| Sbjct 16963 CCATACACATCCAATATCTACTCCCGACGTGTCCTGGCTGGTGAATTCCAAGTCGTTAAC 17022 Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 76687 | | || || || | || ||||||||||| | | |||||| | | Sbjct 17023 CCTTGGTTGTTGAAGGATCTTGTCGATATGGGTCTCTGGTCAGATAACATGAAGAACCGT 17082 Query 76688 ATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAAT 76747 || | | || |||||||| |||||| || | | || || | ||||||||| | Sbjct 17083 ATCATCGCCGATGGAGGTTCCATCCAAAATGTCCCTAACATTCCTGCCGATATCAAGGCT 17142 Query 76748 CTCTACCGCACAGTGTGGGAAAT---CAAGATGAAAGATGTCATTGACATGGCCGCAGAT 76804 || ||| || || ||||| || | || | | | || || | ||||| || ||| Sbjct 17143 CTTTACAAGACTGTCTGGGAGATCTCCCAG-CGTACCA--TCGTTCAGATGGCTGCTGAT 17199 Query 76805 CGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATG 76864 |||||| |||||| || || ||| ||||| | |||| | |||||| ||| Sbjct 17200 CGTGGTGCCTTCATCGACCAGTCCCAATCGATGAACATCCACATGAAGGATCCAACTATG 17259 Query 76865 TCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTAC 76924 |||| || | |||||| | | ||||| ||| || || ||||| |||||| Sbjct 17260 GGCAAGATCACGAGTATGCACTTCGCTGGCTGGAAGTTGGGTCTGAAGACCGGCATGTAC 17319 Query 76925 TATCTCCG 76932 || ||||| Sbjct 17320 TACCTCCG 17327 >seq172 Length=386049 Score = 145 bits (160), Expect = 9e-30 Identities = 304/448 (68%), Gaps = 4/448 (1%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||| |||| || |||| ||||| ||| |||||||||||||||||||| |||||| Sbjct 25345 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 25286 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 | |||| | |||||||||||||| ||||| |||||||| || |||||| || || Sbjct 25285 GCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 25226 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGC-TCTTCAAGACTTT 65249 || || ||||| || || ||||||||| || |||||| || | | ||| || Sbjct 25225 CTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCC-TGCCTCTTGTTCTCCCACTT 25167 Query 65250 GCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGA 65309 | || | || | | || | |||| | | | | | ||||| |||||||| || Sbjct 25166 GAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGATCGA 25107 Query 65310 GAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGAT 65369 | ||| |||| | || || || || ||| ||| |||| |||||| ||| ||| Sbjct 25106 GCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGAT 25047 Query 65370 GTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCAT 65429 | | |||||||||| || | |||||||| ||| | | || | | | Sbjct 25046 GAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTC-CTCGCTCTCGGTAACGAGAAGT 24988 Query 65430 -TTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCA 65488 || || | || ||||| ||||| ||||| ||||| ||||| || ||||||| Sbjct 24987 ATTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCCCTTGCCGGAAAGACCA 24928 Query 65489 ACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||| |||||||| || | ||||| Sbjct 24927 ACTTCTTCGAGAAGCGTGTCGCCGACTA 24900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565811783040