Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq344 104 5e-17
>seq344
Length=396322
Score = 104 bits (114), Expect = 5e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||| || | || | ||| | ||||| ||| || ||| |||||||||
Sbjct 110097 ATACCACCACGAAGGCGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCA 110156
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| || || || |||| ||||| || || ||||| || || | |||||| || || |||
Sbjct 110157 GACAAGGTACGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGT 110216
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || || || || || || || || ||| |||| ||| || |||||
Sbjct 110217 GGGATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCG 110276
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || || || || || || | || || | || ||||||||
Sbjct 110277 ACCTCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 110326
Score = 100 bits (110), Expect = 6e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||| || | |||||| | || | ||| | ||||| ||| || ||| || || ||
Sbjct 109871 ACCTCCACGAAGACGCAGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 109930
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || || |||| ||||| || ||||||||||| || | |||||| || || |||||
Sbjct 109931 CAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGG 109990
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| || || ||||| || || || || || || || | || ||||| || ||
Sbjct 109991 GATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAAC 110050
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||| |||||||| || || ||||| || || || | || ||||||||
Sbjct 110051 TTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 110098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984473592265800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |