Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq248 122 3e-22 seq172 114 4e-20 seq280 111 5e-19 seq87 89.7 2e-12 seq298 84.2 6e-11 seq163 84.2 6e-11 >seq248 Length=298758 Score = 122 bits (134), Expect = 3e-22 Identities = 207/300 (69%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||| ||||||| | ||||| | |||||| || || || ||||| || || || Sbjct 85452 CATAACATCTTCCAGAGCCTTGACAAGACGACGTTGGATGTATCCAGTCTCAGCAGTCTT 85511 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| ||||| || | ||| | |||||| |||||||||||||||| | ||| || Sbjct 85512 AACAGCAGTATCGATCAAACCTTCTCGACCAGCCATAGCATGGAAGAAGAACTCGGTAGG 85571 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | || || | || | | ||| |||||||||| ||||||| || || || | || Sbjct 85572 TGTGAGACCTCGAAGATACGAGTTCTCAACGAATCCACGCGATTCTGGGGAGTAATCATC 85631 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||||| || || || | ||| | || || ||||| | || ||||||||||| || || Sbjct 85632 TTTGGTGAAATGCGGTAAGGTTCGGTACTTGAAGCCGAAAGGAATACGCTTTCCTTCGAC 85691 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||||| || | | | ||||||| |||||||| | | ||||||||||| Sbjct 85692 AGATTGCTGACCGACCAAAGCTGTCATCTGAGAAATATTGATGGTAGAACCCTTGGAGCC 85751 >seq172 Length=386049 Score = 114 bits (126), Expect = 4e-20 Identities = 334/511 (65%), Gaps = 4/511 (1%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||| || || || ||||| | |||||||| | | ||||||||| || ||| | | Sbjct 25407 TTCCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGATAAGGACTCTA 25348 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 || ||| ||||||||||| ||||| | || ||||| || || ||| ||| | | Sbjct 25347 CATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCAT 25288 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || |||||| || ||| | || ||||||||| | | || || || || || |||| Sbjct 25287 TCGCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACG 25228 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAAT 133676 | || || || | ||||| | || |||||||| |||||| | | ||| | | Sbjct 25227 AGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTCCCACT 25168 Query 133677 TAGAGCGACCACTCAA--AAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAAT 133734 | || | | | ||| || || || | |||| |||||| || || ||||| || Sbjct 25167 T-GAACCATCGTCCAAGCAAGCAAGCAG-TCCAAGACGTTATTACCGAGGCTGTTGAGAT 25110 Query 133735 TGAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCT 133794 ||| || || | | | |||||| || || | | | || ||||| | || | Sbjct 25109 CGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTT 25050 Query 133795 GATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGATAA 133854 |||| ||| || ||||| || || ||||| | || | | | ||| || || Sbjct 25049 GATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAA 24990 Query 133855 GATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGAC 133914 | |||| |||||||| |||||||||| ||||||| ||| | ||| |||||| Sbjct 24989 GTATTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCCCTTGCCGGAAAGAC 24930 Query 133915 TAATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945 || ||||||||| | | || ||||| ||| Sbjct 24929 CAACTTCTTCGAGAAGCGTGTCGCCGACTAC 24899 >seq280 Length=414098 Score = 111 bits (122), Expect = 5e-19 Identities = 383/590 (65%), Gaps = 18/590 (3%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | |||||||||||| || | ||||| ||| | || ||| | Sbjct 332195 ATTAGTCCACAGATGTCACACACATGGACTCTAAAGGCATCCGATACCTCGAATAATCTC 332254 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| |||| | || ||||| |||||||||||||||||||||||||| |||||| Sbjct 332255 TCCTTCAAGAAGGACGCCGCTCCGTGCGAAATCATACAATCACGCTCCATTTCTCCGAAA 332314 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||||||||| | || | ||| || ||||||| | || ||| | | ||| Sbjct 332315 CGCAGACCACCATCTCTGGCACGACCTTCTACAGGCTGTCTGGTCAGAATCTGAACGGGA 332374 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || ||| ||| ||| ||| || | |||||||| ||||| || || | | Sbjct 332375 CCTCTGGCTCGGGCATGGATCTTGTCGTCCACCATATGGCGCAGACGTTGATAATAGGTT 332434 Query 251647 GGACCGATGAAGATGCTCGAAGGCATTTGCTCT---CCAGTTAGAGCGTTATACATAACT 251703 ||||| | ||||| || | || ||| || | ||||| || | | |||||| | Sbjct 332435 GGACCAAGGAAGA--CTTG-AGCCATCATCTTTCGCCCAGTGTGACCATGATACATGATC 332491 Query 251704 TCGTTTCCATTAGATTCATAACCAAGTTTC---TGTAGCTCTGAAGCAATATCACCAATC 251760 ||| ||| ||| | ||||||| | | | |||| ||| | |||| || Sbjct 332492 TCGAAGCCACGAGAATGATAACCATGAGCCCGGAGAAGCTTCGAAACGGAATCAACA--- 332548 Query 251761 TTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCT 251820 ||| | | |||| || | || || | || || | || | || || | Sbjct 332549 GTGACCTCGGTAAAGGGCGTCGCATCACCCTCGAGTCCACGAAGCGTCGAAACCTTACTC 332608 Query 251821 AAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATG 251880 | | ||| ||| ||||| || ||||||||| |||||||| ||||| |||||| Sbjct 332609 AGTTGACACTCGATCAAATGGGCAATTGTCATACGAGATGGAATAGCGTGGGGGTTGATG 332668 Query 251881 ATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAA-TG 251937 || | || || | || | |||||| |||||||| ||| | | ||| || Sbjct 332669 ATCAAATCCGGCACGATACCCTGGCAAGTGAATGGCATATC---TTCATGACGGTAAGTG 332725 Query 251938 TTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || || || ||||| |||||||| ||||| || ||||||||||| Sbjct 332726 ATACCGATGGTACCCTTCTGTCCGTGGCGAGAGGCAAATTTATCACCAAT 332775 >seq87 Length=94830 Score = 89.7 bits (98), Expect = 2e-12 Identities = 200/293 (68%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 288937 TTAAATCCATCCATACTTGTTAA-AATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 |||||||| ||||| || | ||| ||| ||||| || || ||| | |||||| ||| Sbjct 73078 TTAAATCCGTCCAT-CTCGGTAAGAATCTGATTGAGAGTGGCTTCTCGTTCATCGTTTCC 73020 Query 288996 ACCTCTTGAATCACCC-GAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGA 289054 ||| | |||| | || | | | | ||| || | ||| || || || || |||| Sbjct 73019 ACCGCC-GAATGATCCAGCCTTCCCACGAGCTTTTCCGATAGCGTCGATCTCATCGATGA 72961 Query 289055 AAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114 | || | ||| || | || | ||| || || | ||||| || | || | || || | Sbjct 72960 AGATAATACAAGGCGTGTTCTTTCTTGCCATAGTGAATAAATCACGCACCCTCGAAGCAC 72901 Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT-TGAATGAATGTTACATTT 289173 | | ||||||| |||| || || ||||| ||| |||| || |||| ||||| ||| | Sbjct 72900 CTACACCAACAAACATCTCCACGAATTCGGAACCGGAAACGCTGAA-GAATGGTACTTGA 72842 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 | ||| || || ||| | |||||||| | |||||||||||||| || || Sbjct 72841 GATTCACCAGCGGTAGCCTTGGCCAGAAGAGKTTTACCTGTTCCAGGAGGACC 72789 >seq298 Length=1165341 Score = 84.2 bits (92), Expect = 6e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 251497 ATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCG 251556 |||| ||| ||||| ||||| || || ||||| |||||||| ||||||| | ||| || Sbjct 601404 ATCAGACAGTCACGTTCCATCTCTCCTAAACGGAGACCACCGTCGCGAGAACGACCTTCT 601463 Query 251557 GCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATTT 251616 | |||||||||||||| | | |||||| || || ||| |||||| | Sbjct 601464 GTTGGCTGACGAGTGAGGATTGCACGGGGACCGCGAGAACGTGAATGCATCTTATCTTGA 601523 Query 251617 ACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||||| |||||||| ||||||| | || |||| |||||| Sbjct 601524 ACCATGTGCTTGAGTTTCTGGTAGTAGATAGGTCCGAAGAAGAT 601567 >seq163 Length=340449 Score = 84.2 bits (92), Expect = 6e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 353913 GCGACCATCCACAACCGACCATACTTCGGGGCAGAGTGCAGAATAGAATTCC-CGCTGAT 353971 |||||| || |||| |||| || |||||||| ||| ||||||| || || | Sbjct 247793 GCGACCGTCAGCAACGTGCCATTGCTCAGGGCAGAGCGCACCGACGAATTCCTCGTTG-T 247851 Query 353972 GAGATATAATAATCACACCCCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCG 354031 |||| || || || ||||| || ||| ||| || || ||| | ||||| | Sbjct 247852 GAGAAATCATGATAACACCTCCCTTGTAGTCACGAATAGCGACAGCAAGACCTCCAAGAG 247911 Query 354032 AGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACA 354091 | ||||| || | |||||| ||||||||||| |||| |||| || || | |||||| Sbjct 247912 AATCACGATCTAAGAAATTGGTAGGTTCGTCGAGGACGAGAAGATGGGGGTTGTTCCACA 247971 Query 354092 TTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 | || | || || || ||||| || |||||||| || || || Sbjct 247972 TAGCACCTGCGAGGACAACCTTGACTTTCTGTCCACCGGAAAG 248014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471808020307196