Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq248 122 3e-22
seq172 114 4e-20
seq280 111 5e-19
seq87 89.7 2e-12
seq298 84.2 6e-11
seq163 84.2 6e-11
>seq248
Length=298758
Score = 122 bits (134), Expect = 3e-22
Identities = 207/300 (69%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||||| ||||||| | ||||| | |||||| || || || ||||| || || ||
Sbjct 85452 CATAACATCTTCCAGAGCCTTGACAAGACGACGTTGGATGTATCCAGTCTCAGCAGTCTT 85511
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
||||| ||||| || | ||| | |||||| |||||||||||||||| | ||| ||
Sbjct 85512 AACAGCAGTATCGATCAAACCTTCTCGACCAGCCATAGCATGGAAGAAGAACTCGGTAGG 85571
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
| || || | || | | ||| |||||||||| ||||||| || || || | ||
Sbjct 85572 TGTGAGACCTCGAAGATACGAGTTCTCAACGAATCCACGCGATTCTGGGGAGTAATCATC 85631
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804
||||| || || || | ||| | || || ||||| | || ||||||||||| || ||
Sbjct 85632 TTTGGTGAAATGCGGTAAGGTTCGGTACTTGAAGCCGAAAGGAATACGCTTTCCTTCGAC 85691
Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864
||||| || | | | ||||||| |||||||| | | |||||||||||
Sbjct 85692 AGATTGCTGACCGACCAAAGCTGTCATCTGAGAAATATTGATGGTAGAACCCTTGGAGCC 85751
>seq172
Length=386049
Score = 114 bits (126), Expect = 4e-20
Identities = 334/511 (65%), Gaps = 4/511 (1%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
|||| || || || ||||| | |||||||| | | ||||||||| || ||| | |
Sbjct 25407 TTCCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGATAAGGACTCTA 25348
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|| ||| ||||||||||| ||||| | || ||||| || || ||| ||| | |
Sbjct 25347 CATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCAT 25288
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| |||||| || ||| | || ||||||||| | | || || || || || ||||
Sbjct 25287 TCGCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACG 25228
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAAT 133676
| || || || | ||||| | || |||||||| |||||| | | ||| | |
Sbjct 25227 AGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTCCCACT 25168
Query 133677 TAGAGCGACCACTCAA--AAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAAT 133734
| || | | | ||| || || || | |||| |||||| || || ||||| ||
Sbjct 25167 T-GAACCATCGTCCAAGCAAGCAAGCAG-TCCAAGACGTTATTACCGAGGCTGTTGAGAT 25110
Query 133735 TGAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCT 133794
||| || || | | | |||||| || || | | | || ||||| | || |
Sbjct 25109 CGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTT 25050
Query 133795 GATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGATAA 133854
|||| ||| || ||||| || || ||||| | || | | | ||| || ||
Sbjct 25049 GATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAA 24990
Query 133855 GATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGAC 133914
| |||| |||||||| |||||||||| ||||||| ||| | ||| ||||||
Sbjct 24989 GTATTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCCCTTGCCGGAAAGAC 24930
Query 133915 TAATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945
|| ||||||||| | | || ||||| |||
Sbjct 24929 CAACTTCTTCGAGAAGCGTGTCGCCGACTAC 24899
>seq280
Length=414098
Score = 111 bits (122), Expect = 5e-19
Identities = 383/590 (65%), Gaps = 18/590 (3%)
Strand=Plus/Plus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| || ||||| | | |||||||||||| || | ||||| ||| | || ||| |
Sbjct 332195 ATTAGTCCACAGATGTCACACACATGGACTCTAAAGGCATCCGATACCTCGAATAATCTC 332254
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| |||| | || ||||| |||||||||||||||||||||||||| ||||||
Sbjct 332255 TCCTTCAAGAAGGACGCCGCTCCGTGCGAAATCATACAATCACGCTCCATTTCTCCGAAA 332314
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586
|| ||||||||||| | || | ||| || ||||||| | || ||| | | |||
Sbjct 332315 CGCAGACCACCATCTCTGGCACGACCTTCTACAGGCTGTCTGGTCAGAATCTGAACGGGA 332374
Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646
|| ||| ||| ||| ||| || | |||||||| ||||| || || | |
Sbjct 332375 CCTCTGGCTCGGGCATGGATCTTGTCGTCCACCATATGGCGCAGACGTTGATAATAGGTT 332434
Query 251647 GGACCGATGAAGATGCTCGAAGGCATTTGCTCT---CCAGTTAGAGCGTTATACATAACT 251703
||||| | ||||| || | || ||| || | ||||| || | | |||||| |
Sbjct 332435 GGACCAAGGAAGA--CTTG-AGCCATCATCTTTCGCCCAGTGTGACCATGATACATGATC 332491
Query 251704 TCGTTTCCATTAGATTCATAACCAAGTTTC---TGTAGCTCTGAAGCAATATCACCAATC 251760
||| ||| ||| | ||||||| | | | |||| ||| | |||| ||
Sbjct 332492 TCGAAGCCACGAGAATGATAACCATGAGCCCGGAGAAGCTTCGAAACGGAATCAACA--- 332548
Query 251761 TTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCT 251820
||| | | |||| || | || || | || || | || | || || |
Sbjct 332549 GTGACCTCGGTAAAGGGCGTCGCATCACCCTCGAGTCCACGAAGCGTCGAAACCTTACTC 332608
Query 251821 AAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATG 251880
| | ||| ||| ||||| || ||||||||| |||||||| ||||| ||||||
Sbjct 332609 AGTTGACACTCGATCAAATGGGCAATTGTCATACGAGATGGAATAGCGTGGGGGTTGATG 332668
Query 251881 ATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAA-TG 251937
|| | || || | || | |||||| |||||||| ||| | | ||| ||
Sbjct 332669 ATCAAATCCGGCACGATACCCTGGCAAGTGAATGGCATATC---TTCATGACGGTAAGTG 332725
Query 251938 TTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
| || || || ||||| |||||||| ||||| || |||||||||||
Sbjct 332726 ATACCGATGGTACCCTTCTGTCCGTGGCGAGAGGCAAATTTATCACCAAT 332775
>seq87
Length=94830
Score = 89.7 bits (98), Expect = 2e-12
Identities = 200/293 (68%), Gaps = 6/293 (2%)
Strand=Plus/Minus
Query 288937 TTAAATCCATCCATACTTGTTAA-AATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995
|||||||| ||||| || | ||| ||| ||||| || || ||| | |||||| |||
Sbjct 73078 TTAAATCCGTCCAT-CTCGGTAAGAATCTGATTGAGAGTGGCTTCTCGTTCATCGTTTCC 73020
Query 288996 ACCTCTTGAATCACCC-GAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGA 289054
||| | |||| | || | | | | ||| || | ||| || || || || ||||
Sbjct 73019 ACCGCC-GAATGATCCAGCCTTCCCACGAGCTTTTCCGATAGCGTCGATCTCATCGATGA 72961
Query 289055 AAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114
| || | ||| || | || | ||| || || | ||||| || | || | || || |
Sbjct 72960 AGATAATACAAGGCGTGTTCTTTCTTGCCATAGTGAATAAATCACGCACCCTCGAAGCAC 72901
Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT-TGAATGAATGTTACATTT 289173
| | ||||||| |||| || || ||||| ||| |||| || |||| ||||| ||| |
Sbjct 72900 CTACACCAACAAACATCTCCACGAATTCGGAACCGGAAACGCTGAA-GAATGGTACTTGA 72842
Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226
| ||| || || ||| | |||||||| | |||||||||||||| || ||
Sbjct 72841 GATTCACCAGCGGTAGCCTTGGCCAGAAGAGKTTTACCTGTTCCAGGAGGACC 72789
>seq298
Length=1165341
Score = 84.2 bits (92), Expect = 6e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 251497 ATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCG 251556
|||| ||| ||||| ||||| || || ||||| |||||||| ||||||| | ||| ||
Sbjct 601404 ATCAGACAGTCACGTTCCATCTCTCCTAAACGGAGACCACCGTCGCGAGAACGACCTTCT 601463
Query 251557 GCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATTT 251616
| |||||||||||||| | | |||||| || || ||| |||||| |
Sbjct 601464 GTTGGCTGACGAGTGAGGATTGCACGGGGACCGCGAGAACGTGAATGCATCTTATCTTGA 601523
Query 251617 ACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660
||||| |||||||| ||||||| | || |||| ||||||
Sbjct 601524 ACCATGTGCTTGAGTTTCTGGTAGTAGATAGGTCCGAAGAAGAT 601567
>seq163
Length=340449
Score = 84.2 bits (92), Expect = 6e-11
Identities = 154/223 (69%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 353913 GCGACCATCCACAACCGACCATACTTCGGGGCAGAGTGCAGAATAGAATTCC-CGCTGAT 353971
|||||| || |||| |||| || |||||||| ||| ||||||| || || |
Sbjct 247793 GCGACCGTCAGCAACGTGCCATTGCTCAGGGCAGAGCGCACCGACGAATTCCTCGTTG-T 247851
Query 353972 GAGATATAATAATCACACCCCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCG 354031
|||| || || || ||||| || ||| ||| || || ||| | ||||| |
Sbjct 247852 GAGAAATCATGATAACACCTCCCTTGTAGTCACGAATAGCGACAGCAAGACCTCCAAGAG 247911
Query 354032 AGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACA 354091
| ||||| || | |||||| ||||||||||| |||| |||| || || | ||||||
Sbjct 247912 AATCACGATCTAAGAAATTGGTAGGTTCGTCGAGGACGAGAAGATGGGGGTTGTTCCACA 247971
Query 354092 TTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134
| || | || || || ||||| || |||||||| || || ||
Sbjct 247972 TAGCACCTGCGAGGACAACCTTGACTTTCTGTCCACCGGAAAG 248014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471808020307196
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |