Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq87 123 3e-22 seq172 105 8e-17 >seq87 Length=94830 Score = 123 bits (136), Expect = 3e-22 Identities = 89/103 (86%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| ||||||||||| || || || |||| |||||| |||| || ||||||| Sbjct 13127 CCAACTACCTGGACATCAAGCCCCTCCTTGACGTTGGCTGCAAGACTGTCGCGAACATGA 13068 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||| || ||||||||||| |||||||| ||||| Sbjct 13067 TCAAGGGCAAGTCACCAGAGGAGATCCGAAAGACCTTCAACAT 13025 >seq172 Length=386049 Score = 105 bits (116), Expect = 8e-17 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| ||| | || ||| |||||| ||||||||||| || | || ||||| |||||| Sbjct 24899 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCAT 24958 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||| ||||||| | |||||| | ||| ||| ||||| | |||||| || Sbjct 24959 GAAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAGGAGCAGACG 25018 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 || ||||| ||||| ||||| || ||| | | ||||||||||||| || || Sbjct 25019 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 25078 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG 868924 || || | || ||| ||||||| ||||||||| || |||||| Sbjct 25079 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCG 25124 Score = 89.7 bits (98), Expect = 6e-12 Identities = 138/194 (71%), Gaps = 5/194 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| || ||| | |||||| |||| || || ||||| || || ||||| Sbjct 25205 ACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGACCACGCTT 25264 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| | ||| || || | | ||| || ||||| ||||| ||||| || |||||||| Sbjct 25265 CTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAGCGGCAAA 25324 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTC-CTTGTTGATCCACTTCATCGCCC 869357 | | | ||| |||| || || ||| ||| || | |||| |||||| | | |||| Sbjct 25325 GGCAACGAGACGCTGAGCGAA--TGTAGAGTCCTTATCTTG--GATCCATCTTACGGCCC 25380 Query 869358 AGTCGGCCTTTTTC 869371 |||||||||| ||| Sbjct 25381 AGTCGGCCTTCTTC 25394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107097511141036