Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq487 190 2e-43
seq359 114 1e-20
seq344 89.7 5e-13
>seq487
Length=114140
Score = 190 bits (210), Expect = 2e-43
Identities = 983/1538 (64%), Gaps = 70/1538 (5%)
Strand=Plus/Minus
Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560
||| | ||| || |||||||| |||| || || || ||| || ||| ||| | ||
Sbjct 17022 GTTAACGACTTGGAATTCACCAGCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGG 16963
Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620
||| || | |||||| || || || ||| || | || || ||||| || ||
Sbjct 16962 CTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAAC 16903
Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680
| | | || || | |||||| |||||||| ||| ||| | | | |||||||||
Sbjct 16902 GAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCCCAGTCCCA 16843
Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCA---AACTTGCGGG 138737
| |||| ||||| | |||||||||||||| || | | ||| || || ||
Sbjct 16842 AAGATCGGTAGGTGTAACCTTCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGA 16783
Query 138738 ACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTT-GCTCGCCTCGA 138796
|| ||||||| | ||||| |||| || | || | ||| | | || |
Sbjct 16782 AC---CTTCGTATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTCAA 16726
Query 138797 GCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCT 138856
| ||| | | ||| || || ||| ||||| ||||| | |||||||| ||
Sbjct 16725 G-GCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACT 16667
Query 138857 CGTACGGCATGCG--GAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGAC 138914
|| | || | || |||| | | ||| | ||||| || || || || || || | |
Sbjct 16666 CGAATGGGAGACGAAGAGC-TAG-GAARACATCGGCGAGACCCTGGACACCAACAGCAAT 16609
Query 138915 AGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTCG---ATAGGATAATAGTTTACAT 138970
||| | || || | ||| ||| ||||| || ||| | ||| || ||||| | |
Sbjct 16608 AGGTCTGTGACGGAAATT----GCTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGT 16553
Query 138971 CGATGATTTTGTTTAAATTTCGCACGACCACCTT--AGTCGTATGCTTTAATCGT-TCAA 139027
||||||| ||||| || || |||||| |||| || | | | | || | | | ||
Sbjct 16552 CGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACAT---CGTGAAGCTTCTGAA 16496
Query 139028 AATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGG 139087
| ||||| |||| | || | || |||| || ||| || | || || |
Sbjct 16495 AGTCGTAGCTGCCATCATTTTGGTTGACGT--------AAGTTGG-GAGAGCAAGAGAAG 16445
Query 139088 CTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAAT 139147
| | ||| || || || || ||||| || | | |||||| || || || | || | ||
Sbjct 16444 CCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACGATCTCTGTGCAGAGAT 16385
Query 139148 TACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGT 139207
| | ||| ||||| | || | ||||| || || ||||| |||||||| ||||
Sbjct 16384 TGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTACGGTTGCAAGCATCCTTGT 16325
Query 139208 AAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCC 139267
| ||||| | || | || || || ||| | ||| | ||| | | | ||| |
Sbjct 16324 AGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCA-AAGCTTC 16266
Query 139268 TAG--CTTGTAT----TTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTT 139321
| | |||| || ||| || | | ||| | ||||||||| ||||| ||
Sbjct 16265 TGGGCCTTG-ATGGTCTTG-CGACCCTTGCCTTCTGC---CTCGTACTTCTCGTAAAGAG 16211
Query 139322 CGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCG 139381
| || ||| |||||||| | |||| |||| || | |||| || || ||||| || |
Sbjct 16210 CCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTG 16151
Query 139382 ACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACA 139441
|||| || ||| || || ||| ||||||| ||||| |||||||| | |||| | |
Sbjct 16150 TCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGA 16091
Query 139442 GCAAATCGCGCGC-----CTTCTTATCTTCCGAACCCATGTTACGTTTC--ATGTTAAGG 139494
| |||||| || |||| | ||||| || | | |||| | | ||||
Sbjct 16090 AGAGATCGCGAGCGCGAACTTCCTCCTTTCCG------TGGTTC-TTTCGGAGATCAAGG 16038
Query 139495 AAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---T 139551
|| ||||| || |||||||||||||| || || ||||| || | || || ||
Sbjct 16037 AACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTA 15978
Query 139552 TTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGA 139611
|| ||||| || || || | || | | || ||||| || || | ||| || | | |
Sbjct 15977 TTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATA 15918
Query 139612 CCGCTCGCTGTTCCGTTGGTGCTACGGATGGGA-CTGTTGCGAGCTCGGACGTCATGTAC 139670
||| | | | ||||| |||| | ||| | || | | || |||| || ||
Sbjct 15917 CCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTG-GCACGGATTCTGTGGAC 15859
Query 139671 ATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGT 139729
||| | ||||| || || || ||||| || | | ||| || | | || ||||
Sbjct 15858 ATTCAGACCGATGCCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTG-AGAGTATCGT 15800
Query 139730 ATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTA 139789
| ||||| || ||||| |||| ||| || || |||||||| || ||||| | |
Sbjct 15799 AAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTT 15740
Query 139790 GTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTTCGACATC 139848
|| |||||||| ||||| || || ||| |||||| || || | ||| | ||||||
Sbjct 15739 GTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTG-CTGGACATC 15681
Query 139849 AATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGC 139908
|| | ||| || ||||| || ||| ||||||| ||||| ||||| |||| |||| |
Sbjct 15680 AAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCCACAGCCACTCTC 15621
Query 139909 ATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTC 139968
|| | ||| ||||| |||||||| | | |||||||| || || ||
Sbjct 15620 ATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGATCTC 15561
Query 139969 TCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006
|| || |||||| | |||||||| |||||||||||
Sbjct 15560 TCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAATC 15523
>seq359
Length=494912
Score = 114 bits (126), Expect = 1e-20
Identities = 148/203 (73%), Gaps = 1/203 (0%)
Strand=Plus/Plus
Query 24691 ACTGATTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGA 24750
||||| ||| || | || | ||| | ||||| || ||||| || || ||||| |||||
Sbjct 437748 ACTGACTGAC-CGTTCCATAGCTTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGA 437806
Query 24751 AGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAAT 24810
||||| || |||| || | || | || || |||||||| ||||| || |||||
Sbjct 437807 GGTAGAGTCCTCCGATACGATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAAT 437866
Query 24811 ACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT 24870
|| ||||| || |||||||||||||| || || || ||||| |||||| ||| |
Sbjct 437867 CCCCCCCGACCAGCAACGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCT 437926
Query 24871 GTCAGATTATAACATTCAAAAGG 24893
|| || || |||||||||||||
Sbjct 437927 TTCCGACTACAACATTCAAAAGG 437949
>seq344
Length=396322
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || || || ||||| || || || || ||||| || ||| | |
Sbjct 110326 ATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 110267
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || ||||||||| ||||| || || || || ||||| ||
Sbjct 110266 GATACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 110207
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | | || || || || || ||| |||||||| | | | |||| |||||||||
Sbjct 110206 CAGAGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAAC 110147
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|| || ||||| || || || || ||||
Sbjct 110146 ATCCAGAAGGAGTCTACTCTTCATCTGGT 110118
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || || || || || || |||||||| ||| | |||| || | || |
Sbjct 110539 AAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGACAAT 110480
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || |||||||||||||| || || || |||||||| || || | | || ||
Sbjct 110479 GTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAGAGACTCATTTTC 110420
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898
|| || || ||| |||||||| | | | | || ||||| ||||| || ||||| ||
Sbjct 110419 GCTGGAAAGCAGTTGGAGGATGGCCGCACCCTATCCGATTACAACATCCAGAAGGAGTCT 110360
Query 24899 ACACTACACTTGGT 24912
|| || ||||||||
Sbjct 110359 ACTCTCCACTTGGT 110346
Score = 84.2 bits (92), Expect = 2e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787
||||| || || || || ||||| || || | | ||||| | || | || ||
Sbjct 110822 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAAGAGC 110763
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||||||||| || || || || ||||| || || ||||||||||| || || ||
Sbjct 110762 AAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCAAG 110703
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906
||||| ||||| | | | || ||||| ||||| || |||||||| || || ||
Sbjct 110702 CAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTCA 110644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449894743150240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |