Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq487 190 2e-43 seq359 114 1e-20 seq344 89.7 5e-13 >seq487 Length=114140 Score = 190 bits (210), Expect = 2e-43 Identities = 983/1538 (64%), Gaps = 70/1538 (5%) Strand=Plus/Minus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | ||| || |||||||| |||| || || || ||| || ||| ||| | || Sbjct 17022 GTTAACGACTTGGAATTCACCAGCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGG 16963 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| || | |||||| || || || ||| || | || || ||||| || || Sbjct 16962 CTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAAC 16903 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 | | | || || | |||||| |||||||| ||| ||| | | | ||||||||| Sbjct 16902 GAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCCCAGTCCCA 16843 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCA---AACTTGCGGG 138737 | |||| ||||| | |||||||||||||| || | | ||| || || || Sbjct 16842 AAGATCGGTAGGTGTAACCTTCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGA 16783 Query 138738 ACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTT-GCTCGCCTCGA 138796 || ||||||| | ||||| |||| || | || | ||| | | || | Sbjct 16782 AC---CTTCGTATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTCAA 16726 Query 138797 GCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCT 138856 | ||| | | ||| || || ||| ||||| ||||| | |||||||| || Sbjct 16725 G-GCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACT 16667 Query 138857 CGTACGGCATGCG--GAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGAC 138914 || | || | || |||| | | ||| | ||||| || || || || || || | | Sbjct 16666 CGAATGGGAGACGAAGAGC-TAG-GAARACATCGGCGAGACCCTGGACACCAACAGCAAT 16609 Query 138915 AGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTCG---ATAGGATAATAGTTTACAT 138970 ||| | || || | ||| ||| ||||| || ||| | ||| || ||||| | | Sbjct 16608 AGGTCTGTGACGGAAATT----GCTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGT 16553 Query 138971 CGATGATTTTGTTTAAATTTCGCACGACCACCTT--AGTCGTATGCTTTAATCGT-TCAA 139027 ||||||| ||||| || || |||||| |||| || | | | | || | | | || Sbjct 16552 CGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACAT---CGTGAAGCTTCTGAA 16496 Query 139028 AATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGG 139087 | ||||| |||| | || | || |||| || ||| || | || || | Sbjct 16495 AGTCGTAGCTGCCATCATTTTGGTTGACGT--------AAGTTGG-GAGAGCAAGAGAAG 16445 Query 139088 CTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAAT 139147 | | ||| || || || || ||||| || | | |||||| || || || | || | || Sbjct 16444 CCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACGATCTCTGTGCAGAGAT 16385 Query 139148 TACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGT 139207 | | ||| ||||| | || | ||||| || || ||||| |||||||| |||| Sbjct 16384 TGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTACGGTTGCAAGCATCCTTGT 16325 Query 139208 AAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCC 139267 | ||||| | || | || || || ||| | ||| | ||| | | | ||| | Sbjct 16324 AGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCA-AAGCTTC 16266 Query 139268 TAG--CTTGTAT----TTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTT 139321 | | |||| || ||| || | | ||| | ||||||||| ||||| || Sbjct 16265 TGGGCCTTG-ATGGTCTTG-CGACCCTTGCCTTCTGC---CTCGTACTTCTCGTAAAGAG 16211 Query 139322 CGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCG 139381 | || ||| |||||||| | |||| |||| || | |||| || || ||||| || | Sbjct 16210 CCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTG 16151 Query 139382 ACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACA 139441 |||| || ||| || || ||| ||||||| ||||| |||||||| | |||| | | Sbjct 16150 TCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGA 16091 Query 139442 GCAAATCGCGCGC-----CTTCTTATCTTCCGAACCCATGTTACGTTTC--ATGTTAAGG 139494 | |||||| || |||| | ||||| || | | |||| | | |||| Sbjct 16090 AGAGATCGCGAGCGCGAACTTCCTCCTTTCCG------TGGTTC-TTTCGGAGATCAAGG 16038 Query 139495 AAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---T 139551 || ||||| || |||||||||||||| || || ||||| || | || || || Sbjct 16037 AACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTA 15978 Query 139552 TTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGA 139611 || ||||| || || || | || | | || ||||| || || | ||| || | | | Sbjct 15977 TTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATA 15918 Query 139612 CCGCTCGCTGTTCCGTTGGTGCTACGGATGGGA-CTGTTGCGAGCTCGGACGTCATGTAC 139670 ||| | | | ||||| |||| | ||| | || | | || |||| || || Sbjct 15917 CCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTG-GCACGGATTCTGTGGAC 15859 Query 139671 ATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGT 139729 ||| | ||||| || || || ||||| || | | ||| || | | || |||| Sbjct 15858 ATTCAGACCGATGCCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTG-AGAGTATCGT 15800 Query 139730 ATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTA 139789 | ||||| || ||||| |||| ||| || || |||||||| || ||||| | | Sbjct 15799 AAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTT 15740 Query 139790 GTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTTCGACATC 139848 || |||||||| ||||| || || ||| |||||| || || | ||| | |||||| Sbjct 15739 GTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTG-CTGGACATC 15681 Query 139849 AATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGC 139908 || | ||| || ||||| || ||| ||||||| ||||| ||||| |||| |||| | Sbjct 15680 AAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCCACAGCCACTCTC 15621 Query 139909 ATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTC 139968 || | ||| ||||| |||||||| | | |||||||| || || || Sbjct 15620 ATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGATCTC 15561 Query 139969 TCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || || |||||| | |||||||| ||||||||||| Sbjct 15560 TCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAATC 15523 >seq359 Length=494912 Score = 114 bits (126), Expect = 1e-20 Identities = 148/203 (73%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 24691 ACTGATTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGA 24750 ||||| ||| || | || | ||| | ||||| || ||||| || || ||||| ||||| Sbjct 437748 ACTGACTGAC-CGTTCCATAGCTTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGA 437806 Query 24751 AGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAAT 24810 ||||| || |||| || | || | || || |||||||| ||||| || ||||| Sbjct 437807 GGTAGAGTCCTCCGATACGATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAAT 437866 Query 24811 ACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT 24870 || ||||| || |||||||||||||| || || || ||||| |||||| ||| | Sbjct 437867 CCCCCCCGACCAGCAACGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCT 437926 Query 24871 GTCAGATTATAACATTCAAAAGG 24893 || || || ||||||||||||| Sbjct 437927 TTCCGACTACAACATTCAAAAGG 437949 >seq344 Length=396322 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||| || || || || ||||| || ||| | | Sbjct 110326 ATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 110267 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||| ||||| || || || || ||||| || Sbjct 110266 GATACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 110207 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || || || || || ||| |||||||| | | | |||| ||||||||| Sbjct 110206 CAGAGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAAC 110147 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || || |||| Sbjct 110146 ATCCAGAAGGAGTCTACTCTTCATCTGGT 110118 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || || || || |||||||| ||| | |||| || | || | Sbjct 110539 AAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGACAAT 110480 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||||||||| || || || |||||||| || || | | || || Sbjct 110479 GTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAGAGACTCATTTTC 110420 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || ||| |||||||| | | | | || ||||| ||||| || ||||| || Sbjct 110419 GCTGGAAAGCAGTTGGAGGATGGCCGCACCCTATCCGATTACAACATCCAGAAGGAGTCT 110360 Query 24899 ACACTACACTTGGT 24912 || || |||||||| Sbjct 110359 ACTCTCCACTTGGT 110346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || ||||| || || | | ||||| | || | || || Sbjct 110822 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAAGAGC 110763 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || || || || ||||| || || ||||||||||| || || || Sbjct 110762 AAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCAAG 110703 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||||| ||||| | | | || ||||| ||||| || |||||||| || || || Sbjct 110702 CAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTCA 110644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894743150240