Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq87 114 2e-19 seq172 111 2e-18 >seq87 Length=94830 Score = 114 bits (126), Expect = 2e-19 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||| ||||||||||||||||| || | || |||||||| || || ||| | | Sbjct 13127 CCAACTACCTGGACATCAAGCCCCTCCTTGACGTTGGCTGCAAGACTGTCGCGAACATGA 13068 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 ||||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 13067 TCAAGGGCAAGTCACCAGAGGAGATCCGAAAGACCTTCAACAT 13025 >seq172 Length=386049 Score = 111 bits (122), Expect = 2e-18 Identities = 163/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || ||| | || ||| |||||| ||||||||||| || | || ||||| |||||| Sbjct 24900 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATG 24959 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCG-CACC-CGAGCGACGCAAGCAGGC 794025 | ||| |||||||| | | ||| | ||||||| ||| |||||| | ||||| | Sbjct 24960 AAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAGG--AGCAGAC 25017 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085 | || |||||||| |||||||| || ||| | || ||||||||||||| || || Sbjct 25018 GATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCAC 25077 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCG 794132 ||| || | || | | ||||||| ||||||||| || |||||| Sbjct 25078 AGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCG 25124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916192361723012