Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq344 104 2e-17
seq116 96.9 2e-15
seq359 95.1 8e-15
>seq344
Length=396322
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| ||||| |||| || ||||||||| |||||||| || || | | | || ||||
Sbjct 110115 AGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATCC 110174
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| |||||||| ||||| || |||| |||||||| | || | |||||||||||
Sbjct 110175 TCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCC 110234
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || ||| |||||| | || | ||| | ||||| || | || || |||
Sbjct 110235 TGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGTC 110294
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || ||||| || || ||||||||
Sbjct 110295 TTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 110326
Score = 95.1 bits (104), Expect = 8e-15
Identities = 144/205 (70%), Gaps = 10/205 (5%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||| | || ||||||||| ||||| || || |||||| |||| ||||
Sbjct 110343 AGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGATAGGGTGCGGCCATCC 110402
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| |||||||| ||||| || |||| |||||||| | || | |||||||||||
Sbjct 110403 TCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCT 110462
Query 34886 TTTATTTTTTGTTTGAC-----GGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940
| || || ||||| |||| ||||| | || ||||| || | || |
Sbjct 110463 TGGATCTTCGACTTGACATTGTCGATGGTATCGGATGAT-----TCGACTTCGAGAGTGA 110517
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTAC 34965
||||||| || || || ||||| ||
Sbjct 110518 TGGTCTTGCCAGTAAGAGTCTTGAC 110542
>seq116
Length=121463
Score = 96.9 bits (106), Expect = 2e-15
Identities = 138/194 (71%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || |||| || ||||||||| ||||| ||||| || ||| | || ||||
Sbjct 20334 AGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCT 20393
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| ||||||||||| || ||||| ||||| | || | |||||||||||
Sbjct 20394 TCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCC 20453
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| | ||||||| || | ||| || || | ||| ||
Sbjct 20454 TGGATCTTGGACTTGAC----GTTATCGATAGTATCGGAAGACTCTACCTCTAGGGTAAT 20509
Query 34942 GGTCTTTCCCGTGA 34955
||||| |||||||
Sbjct 20510 TGTCTTGCCCGTGA 20523
>seq359
Length=494912
Score = 95.1 bits (104), Expect = 8e-15
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
|||| |||||||| ||||| || || | || |||| || || |||||||| |||||||
Sbjct 437949 CCTTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGA 437890
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| ||||||||||| | || | ||||||||||| | || || |||||
Sbjct 437889 TCAAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 437830
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| |||| || || ||| || || | ||| || |||||||| ||||| || || || |
Sbjct 437829 CAATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGA 437770
Query 34968 AG 34969
||
Sbjct 437769 AG 437768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325690783554452
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |