Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq185 120 2e-21
seq248 96.9 3e-14
seq125 87.8 1e-11
>seq185
Length=385050
Score = 120 bits (132), Expect = 2e-21
Identities = 414/638 (65%), Gaps = 6/638 (1%)
Strand=Plus/Minus
Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241
||||||||||| || || || ||||| ||||| | ||| | || | |||| | ||
Sbjct 61628 ACAAGACGATTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACC 61569
Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301
| || | || || || | || ||| |||| ||||| ||||| ||||| | |||
Sbjct 61568 TCAAAGATACCCTCCTCGATAGTCAAGAGAGAGACATCGAAAGTTCCTCCACCAAGATCG 61509
Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361
|| || || ||||| || || || || |||||||| || |||| |||||
Sbjct 61508 AAGATGAGGACATTACGCTCACCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCAGCG 61449
Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421
|||||||| || || || |||| | |||||| ||||| || || || ||||| ||
Sbjct 61448 GCAGTTGGCTCGTTGATGATTCGGAGAACATTGAGACCGGCGATCAGACCGGCATCCTTT 61389
Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-AC 282480
|| ||||| | || || || | || || || || ||||||| ||||| | |||| ||
Sbjct 61388 GTAGCTTGACGCTGGGAGTCAGTGAAGTAAGCTGGTACAGTAACGACGGCGT-TGTTGAC 61330
Query 282481 TTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 282540
| ||| | ||||| || || | | |||| || || ||||| || || ||
Sbjct 61329 GGTTCCTCCGAGGTAAGCCTCAGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGAT 61270
Query 282541 TTGTTCTGGAGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTAT 282599
| || || | ||||||| || |||| | | || || | ||| ||
Sbjct 61269 CTCCTCAGGTGTGAATTGCTTCTTCTCGCCCTTGAACTCA-ACCTCGACGACTGGCTTTC 61211
Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTG-GTCA 282658
|||| | || ||| | || || | | |||||||| | || || || | ||
Sbjct 61210 CACCACGGTCAAGAACAGTGAAGGGGAAGTGCTTCATATCAGCCTGGAC-CTCAGCATCT 61152
Query 282659 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCA 282718
| | | ||||| | || || ||||| || | ||| ||| |||| || | |||
Sbjct 61151 GCGTACTTGCGTCCAATCAGACGCTTGGCATCGAAGACAGTGTTGATTGGGTTCATGGCA 61092
Query 282719 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 282778
|||| | ||||| |||||||| |||| | | || || ||||| || | || | ||
Sbjct 61091 ACTTGGTTCTTGGCAGCATCTCCGATCAAACGCTCAGTATCTGTGAAGGCGACGAAGGAA 61032
Query 282779 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 282816
|| |||||||| || || || || || |||||||||||
Sbjct 61031 GGTGTTGTGCGGTTTCCCTGGTCGTTTGCAATAATTTC 60994
>seq248
Length=298758
Score = 96.9 bits (106), Expect = 3e-14
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347
||||| ||||||||| || | || ||||||||||| |||||||||||| | || ||||||
Sbjct 87008 GGTAAGGAAGGTCGTCTTCGTGGTAATTTGATGGGTAAGCGTGTCGATTTCTCGGCACGT 86949
Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407
|| || |||||| ||| || ||| | |||| |||| ||||| || || | ||||
Sbjct 86948 ACCGTCATTACTGGTGACCCGAATTTATCTCTGGATGAGGTTGGAGTACCCAGAAGTATT 86889
Query 432408 GCG 432410
|||
Sbjct 86888 GCG 86886
Score = 87.8 bits (96), Expect = 1e-11
Identities = 115/156 (74%), Gaps = 5/156 (3%)
Strand=Plus/Minus
Query 435113 TCGAGGGTCTTGGACCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTA 435172
|||||| ||| |||| || || |||||||| | ||||||||||| |||||| | |
Sbjct 85584 TCGAGG-TCTCACACCTACCGAGTTCTTCTTCCATGCTATGGCTGGTCGAGAAGGTTTGA 85526
Query 435173 TTAATACAGCTATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGC 435232
| |||| ||| |||| |||||||| ||||| || || ||| | ||||||||| |
Sbjct 85525 TCGATACTGCTGTTAAGACTGCTGAGACTGGATACATCCAACGTCGTCTTGTCAAGGCTC 85466
Query 435233 TTGAAGATATTAAA--CAAGAATATGATGGTACAGT 435266
| |||||| ||| |||| || |||||||||||
Sbjct 85465 TGGAAGATGTTATGGCCAAG--TACGATGGTACAGT 85432
>seq125
Length=220014
Score = 87.8 bits (96), Expect = 1e-11
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 282341 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 282400
||||| || |||| ||||||||||||||| || || || || | | ||| || ||||||
Sbjct 158178 AGACCGTAGGCAATAGCAGCAGCAGTTGGCTCGTTGATGATGCGGAGAACGTTGAGACCA 158237
Query 282401 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 282460
||||| || ||||| ||||| ||||| | ||| ||||| || || ||||| |||
Sbjct 158238 GCAATGGCACCAGCATCCTTAGTAGCTTGACGTTGGTTGTCGTTGAAGTAGGCAGGGACA 158297
Query 282461 GTAATAACGGC 282471
|| || || ||
Sbjct 158298 GTGATGACAGC 158308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740605459346808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |