Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq344 118 2e-21
>seq344
Length=396322
Score = 118 bits (130), Expect = 2e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| ||||| | || |||||||| || ||||| || ||||||||||| | | | ||
Sbjct 110112 CGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCA 110171
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || | || |||||||| || || ||||| || || || || || || || |||||
Sbjct 110172 TCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTG 110231
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||||| || || || ||||| |||||| | ||| || || | || ||
Sbjct 110232 TCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATT 110291
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || |||| ||||| || || ||||||||
Sbjct 110292 GTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 110326
Score = 98.7 bits (108), Expect = 2e-15
Identities = 147/206 (71%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || | || ||||||||||| ||||| || || ||||| |
Sbjct 110618 TACCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCG 110677
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | |||||| || || || || ||||| ||||| | | || || || || |
Sbjct 110678 AGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGG 110737
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760
| || || ||||| ||||| ||| ||||| || ||||| || || || || || ||
Sbjct 110738 GAATGCCCTCCTTGTCTTGGATC-TTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCG 110796
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGT 82786
|| || | ||| || |||||||| ||
Sbjct 110797 ACCTCGAGAGTGATGGTCTTGCCGGT 110822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981820809532212
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |