Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq487 118 1e-21 seq344 116 4e-21 seq359 105 6e-18 >seq487 Length=114140 Score = 118 bits (130), Expect = 1e-21 Identities = 609/949 (64%), Gaps = 43/949 (5%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||| || || || | ||| || |||||||| | ||| |||||| || ||| || Sbjct 16425 CTCGTCAGGTGCACAGTATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACC 16366 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 | |||||| ||||| ||||| | |||||| || |||||||| |||||| | || || Sbjct 16365 AAGGTTCTTCTGATTACTCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCC 16306 Query 148970 AGTTTCCACCTGCGTTTCCACTATGAA---CCGATGCAGGTCCTGCGCGCGCACTTGCTG 149026 || || |||| || | ||| | || | || | ||| || |||| || Sbjct 16305 GGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGC---TTCTGGGC-----CTTGATG 16254 Query 149027 CTCGTAGCGACCCTC-----CTGC-TCGTA--TAAAGTATACAGCCGCTCGAACGCCTCG 149078 || | |||||||| |||| ||||| | ||| | |||| || || | || Sbjct 16253 GTCTT-GCGACCCTTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCC--TCAAATTCGTCA 16197 Query 149079 CCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCC 149138 ||||| ||| | ||||||||||||| || |||||||| || | ||| || | | Sbjct 16196 CCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTC 16137 Query 149139 GCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCC 149198 | || |||||||| || ||||| || | ||| || ||||| | ||| ||||| || Sbjct 16136 TTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGC- 16078 Query 149199 TTGCAGTCTTCGGCGC--CCATGTTGCGG-CGCAGGTTGAGCACGCTGAATATGTCCGCG 149255 || |||| | || || | | || || | || | || | || ||| Sbjct 16077 --GCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCG 16020 Query 149256 TGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACG 149312 ||||| ||||| | ||| | ||||| || || |||||| || |||||||| || Sbjct 16019 TGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACA 15960 Query 149313 TGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTA 149372 | | | ||||||| || ||||| | |||||| |||| || ||| | ||||| Sbjct 15959 TATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTT 15900 Query 149373 GTAG-AGCTAATGCGA-CTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGC 149430 || ||| |||| | || | | | || || | | |||| || || | |||||||| | Sbjct 15899 GTGCCAGC-AATGTAAGCTCCAGTG-GCACGGATTCTGTGGACATTCAGACCGATGCCTC 15842 Query 149431 CGCCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTG 149489 | | | ||| ||||| || || ||| ||| || ||| || || ||||| ||| Sbjct 15841 CAGCATTCTTGGAGATCATGGCACAAGTCTT-GAGAGTATCGTAAATACCGTCGATACTG 15783 Query 149490 TCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCG 149549 || ||||||| | || ||||| || | | ||| | | |||||||| || Sbjct 15782 TCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCA 15723 Query 149550 AACATGGTGGGGCTGGCGTGTGTAAAATA-TTTCTGGCTCATCATCTCGTACGACTCG-- 149606 || | ||| || ||||||||||| || || |||| ||||| | ||| | |||| Sbjct 15722 AAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGG-ACATCAAATTGTATGTCTCGAT 15664 Query 149607 AGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGC 149666 ||||| | || || ||||| || || || || | || || | ||| | ||| || || Sbjct 15663 AGCACTC--TCAATATCATCCCCGTGAATACCCACAGCCACTCTCATGATCATGTGTTGT 15606 Query 149667 GGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAG 149726 || || || || | ||| | | ||| | ||| | || || |||||| | Sbjct 15605 GGACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAAT 15546 Query 149727 CCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 |||||||| | ||||| || || || | | | ||||||| | || || Sbjct 15545 CCAAAGTATTGGTAGTTGAAATCCCGATCATAGACAATGGCAGAGTTGA 15497 >seq344 Length=396322 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || || ||||| || || | | | ||||| | |||||| || Sbjct 110130 GTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCA-TCCTCCAACTGCTTTCC 110188 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| | |||||||||||| ||||| || |||||||| ||||||| ||| Sbjct 110189 AGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTTGACTT 110248 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || || | | || || |||| |||| || || ||||||||||| Sbjct 110249 GACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGTCTTTCCGGTCAGAGT 110308 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 110309 CTTGACGAAAATCTGCAT 110326 Score = 111 bits (122), Expect = 2e-19 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||||||| | ||| | | | ||||| | |||||| || Sbjct 110358 GTAGACTCCTTCTGGATGTTGTAATCGGATAGGGTGCGGCCA-TCCTCCAACTGCTTTCC 110416 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| | ||||||||||||||||||||| |||||||| |||||| ||| Sbjct 110417 AGCGAAAATGAGTCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTT 110476 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || |||| | || || |||| |||| ||| ||||| || ||||| Sbjct 110477 GACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGTAAGAGT 110536 Query 133643 TTTTACGA 133650 || |||| Sbjct 110537 CTTGACGA 110544 Score = 100 bits (110), Expect = 3e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || |||||||| | ||| ||| |||||||||||||||||| Sbjct 110650 GTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACC-GTCCTCGAGCTGCTTGCC 110708 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||||||||| || ||||| |||||||| |||||| ||| Sbjct 110709 AGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGGATCTTGCTCTT 110768 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | || | ||||| | | ||| || |||| |||| ||| |||||||| Sbjct 110769 GACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 110822 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || ||| | | | ||||| | |||||| || Sbjct 109902 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCA-TCCTCCAACTGCTTACC 109960 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| || | |||||||||||| ||||| || ||||| || |||||| ||| Sbjct 109961 AGCAAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATCTTGGACTT 110020 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || || | || | || || || |||| ||| Sbjct 110021 GACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGT 110080 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 110081 CTTGACGAAGATCTGCAT 110098 >seq359 Length=494912 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || ||| | || | || ||||||||||| ||||| || |||||| Sbjct 437914 TCCTCGAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCGGGGGGGATTCCCTCCTTG 437855 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | |||| ||| |||| || ||| || |||| ||| | Sbjct 437854 TCCTGGATCTTGGACTTGACATTGTCAATCGTATCGGAGGACTCTACCTCGAGGGTAATT 437795 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651 || || ||||| |||||||| ||||| Sbjct 437794 GTCTTTCCGGTGAGAGTTTTGACGAA 437769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417730277920