Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq487 118 1e-21
seq344 116 4e-21
seq359 105 6e-18
>seq487
Length=114140
Score = 118 bits (130), Expect = 1e-21
Identities = 609/949 (64%), Gaps = 43/949 (5%)
Strand=Plus/Minus
Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909
||| || || || | ||| || |||||||| | ||| |||||| || ||| ||
Sbjct 16425 CTCGTCAGGTGCACAGTATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACC 16366
Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969
| |||||| ||||| ||||| | |||||| || |||||||| |||||| | || ||
Sbjct 16365 AAGGTTCTTCTGATTACTCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCC 16306
Query 148970 AGTTTCCACCTGCGTTTCCACTATGAA---CCGATGCAGGTCCTGCGCGCGCACTTGCTG 149026
|| || |||| || | ||| | || | || | ||| || |||| ||
Sbjct 16305 GGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGC---TTCTGGGC-----CTTGATG 16254
Query 149027 CTCGTAGCGACCCTC-----CTGC-TCGTA--TAAAGTATACAGCCGCTCGAACGCCTCG 149078
|| | |||||||| |||| ||||| | ||| | |||| || || | ||
Sbjct 16253 GTCTT-GCGACCCTTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCC--TCAAATTCGTCA 16197
Query 149079 CCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCC 149138
||||| ||| | ||||||||||||| || |||||||| || | ||| || | |
Sbjct 16196 CCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTC 16137
Query 149139 GCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCC 149198
| || |||||||| || ||||| || | ||| || ||||| | ||| ||||| ||
Sbjct 16136 TTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGC- 16078
Query 149199 TTGCAGTCTTCGGCGC--CCATGTTGCGG-CGCAGGTTGAGCACGCTGAATATGTCCGCG 149255
|| |||| | || || | | || || | || | || | || |||
Sbjct 16077 --GCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCG 16020
Query 149256 TGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACG 149312
||||| ||||| | ||| | ||||| || || |||||| || |||||||| ||
Sbjct 16019 TGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACA 15960
Query 149313 TGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTA 149372
| | | ||||||| || ||||| | |||||| |||| || ||| | |||||
Sbjct 15959 TATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTT 15900
Query 149373 GTAG-AGCTAATGCGA-CTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGC 149430
|| ||| |||| | || | | | || || | | |||| || || | |||||||| |
Sbjct 15899 GTGCCAGC-AATGTAAGCTCCAGTG-GCACGGATTCTGTGGACATTCAGACCGATGCCTC 15842
Query 149431 CGCCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTG 149489
| | | ||| ||||| || || ||| ||| || ||| || || ||||| |||
Sbjct 15841 CAGCATTCTTGGAGATCATGGCACAAGTCTT-GAGAGTATCGTAAATACCGTCGATACTG 15783
Query 149490 TCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCG 149549
|| ||||||| | || ||||| || | | ||| | | |||||||| ||
Sbjct 15782 TCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCA 15723
Query 149550 AACATGGTGGGGCTGGCGTGTGTAAAATA-TTTCTGGCTCATCATCTCGTACGACTCG-- 149606
|| | ||| || ||||||||||| || || |||| ||||| | ||| | ||||
Sbjct 15722 AAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGG-ACATCAAATTGTATGTCTCGAT 15664
Query 149607 AGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGC 149666
||||| | || || ||||| || || || || | || || | ||| | ||| || ||
Sbjct 15663 AGCACTC--TCAATATCATCCCCGTGAATACCCACAGCCACTCTCATGATCATGTGTTGT 15606
Query 149667 GGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAG 149726
|| || || || | ||| | | ||| | ||| | || || |||||| |
Sbjct 15605 GGACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAAT 15546
Query 149727 CCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775
|||||||| | ||||| || || || | | | ||||||| | || ||
Sbjct 15545 CCAAAGTATTGGTAGTTGAAATCCCGATCATAGACAATGGCAGAGTTGA 15497
>seq344
Length=396322
Score = 116 bits (128), Expect = 4e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || || ||||| || || | | | ||||| | |||||| ||
Sbjct 110130 GTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCA-TCCTCCAACTGCTTTCC 110188
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| ||||||| | |||||||||||| ||||| || |||||||| ||||||| |||
Sbjct 110189 AGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTTGACTT 110248
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| || || | | || || |||| |||| || || |||||||||||
Sbjct 110249 GACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGTCTTTCCGGTCAGAGT 110308
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||||||||||||
Sbjct 110309 CTTGACGAAAATCTGCAT 110326
Score = 111 bits (122), Expect = 2e-19
Identities = 139/188 (74%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||||||| | ||| | | | ||||| | |||||| ||
Sbjct 110358 GTAGACTCCTTCTGGATGTTGTAATCGGATAGGGTGCGGCCA-TCCTCCAACTGCTTTCC 110416
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| ||||||| | ||||||||||||||||||||| |||||||| |||||| |||
Sbjct 110417 AGCGAAAATGAGTCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTT 110476
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | || |||| | || || |||| |||| ||| ||||| || |||||
Sbjct 110477 GACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGTAAGAGT 110536
Query 133643 TTTTACGA 133650
|| ||||
Sbjct 110537 CTTGACGA 110544
Score = 100 bits (110), Expect = 3e-16
Identities = 128/174 (74%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| || || ||||| || |||||||| | ||| ||| ||||||||||||||||||
Sbjct 110650 GTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACC-GTCCTCGAGCTGCTTGCC 110708
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || | |||||||||||||| || ||||| |||||||| |||||| |||
Sbjct 110709 AGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGGATCTTGCTCTT 110768
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
|| | || | ||||| | | ||| || |||| |||| ||| ||||||||
Sbjct 110769 GACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 110822
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| |||| || ||| | | | ||||| | |||||| ||
Sbjct 109902 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCA-TCCTCCAACTGCTTACC 109960
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| |||| || | |||||||||||| ||||| || ||||| || |||||| |||
Sbjct 109961 AGCAAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATCTTGGACTT 110020
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||| | | ||| || || | || | || || || |||| |||
Sbjct 110021 GACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGT 110080
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 110081 CTTGACGAAGATCTGCAT 110098
>seq359
Length=494912
Score = 105 bits (116), Expect = 6e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|||||||||||||| || ||| | || | || ||||||||||| ||||| || ||||||
Sbjct 437914 TCCTCGAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCGGGGGGGATTCCCTCCTTG 437855
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | |||| ||| |||| || ||| || |||| ||| |
Sbjct 437854 TCCTGGATCTTGGACTTGACATTGTCAATCGTATCGGAGGACTCTACCTCGAGGGTAATT 437795
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651
|| || ||||| |||||||| |||||
Sbjct 437794 GTCTTTCCGGTGAGAGTTTTGACGAA 437769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483417730277920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |