Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq344 114 3e-20 >seq344 Length=396322 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || || ||| ||||||| || |||||| Sbjct 110095 CAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGTCGTCTGAC 110036 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| ||||| || || || || || || || ||| || Sbjct 110035 ACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCGACCAGCAG 109976 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||| || || || ||||||||||| ||||| | |||||| ||| |||||| || Sbjct 109975 AGACTTATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGCGACTACAACATC 109916 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||||||||| || || || || | ||||| Sbjct 109915 CAGAAGGAGTCTACTCTCCATCTGGTGCTGCGTCTTCG 109878 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || ||||| || ||||| | || || ||| ||||| Sbjct 110323 CAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCTGAT 110264 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || || || || || ||| || Sbjct 110263 ACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAGCAG 110204 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| || ||||| |||||||||||||| ||||| | || ||| | ||||| ||| || Sbjct 110203 AGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAACATC 110144 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| |||||||||||||| || ||| | | ||||| Sbjct 110143 CAGAAGGAGTCTACTCTTCATCTGGTTCTTCGCCTTCG 110106 Score = 104 bits (114), Expect = 6e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || || || |||||| | ||||| ||| || || || |||| Sbjct 110540 CAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGACAA 110481 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| || || || || || ||| || ||||| || || Sbjct 110480 TGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAGAGACTCATTTT 110421 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| |||||||||||||| ||||| | || | ||||||||||| ||||||| ||||| Sbjct 110420 CGCTGGAAAGCAGTTGGAGGATGGCCGCACCCTATCCGATTACAACATCCAGAAGGAGTC 110361 Query 206364 TACTCTTCAC 206373 |||||| ||| Sbjct 110360 TACTCTCCAC 110351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181813107823868