Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq359 87.8 2e-12
seq344 82.4 7e-11
>seq359
Length=494912
Score = 87.8 bits (96), Expect = 2e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||||||||||||||| |||| | ||||| | || || |||||||| || || || |
Sbjct 437949 CCTTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGA 437890
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
|||| || |||||||| | || | | |||||||||| |||||| ||| | | |
Sbjct 437889 TCAAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 437830
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | ||| ||| || || ||||| | || || || || || || | |||||| || |
Sbjct 437829 CAATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGA 437770
Query 35727 A 35727
|
Sbjct 437769 A 437769
>seq344
Length=396322
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | ||||| || | ||| |||||| || |||||||||||||
Sbjct 110328 CCACCACGGAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAT 110387
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || |||| |||||| || || || || | | ||||||||| | |||
Sbjct 110388 AGGGTGCGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGAGGG 110447
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || ||||||||| |||||| ||| | | | | | || ||| ||||| ||
Sbjct 110448 ATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTCGACT 110507
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
|| | ||||| || || || || | ||| || ||
Sbjct 110508 TCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 110542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450790737460640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |