Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq487 268 1e-66
seq172 84.2 3e-11
>seq487
Length=114140
Score = 268 bits (296), Expect = 1e-66
Identities = 1138/1776 (64%), Gaps = 35/1776 (2%)
Strand=Plus/Minus
Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433
|| || |||||||| | ||| || | | ||||| || |||||||| ||||| ||||||
Sbjct 17360 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 17301
Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493
|| | |||| || ||| |||||||| || | ||| | ||||||| ||
Sbjct 17300 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 17241
Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553
|| || ||||||||||| || |||||||| || || | ||| || ||||| | |
Sbjct 17240 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 17181
Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613
|| | || | || ||||| | |||||| ||| |||||||| | |||| |
Sbjct 17180 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATG 17121
Query 68614 CTCGT---ATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670
| | |||||| ||||| || ||||||| || || ||||| || | ||| |
Sbjct 17120 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 17061
Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730
|| | | || | | | | | | || ||||| | ||| ||||| |||
Sbjct 17060 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 17001
Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790
| | || | || | ||| ||||| || ||||| || | | | || || ||
Sbjct 17000 GCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 16941
Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850
|| |||||| || |||||||||||||| || || | ||||| || | ||||||
Sbjct 16940 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 16881
Query 68851 TG-TGTTATGATTTTAT-CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908
|| || | |||||| | ||| || || ||| ||||||||||| | ||| ||| |
Sbjct 16880 TGCTGCT-TGATTTGTTGCTTCAAGGTGGC-CCAGTCCCAAAGATCGGTAGGTGTAACCT 16823
Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968
|||| | ||||||||| || ||| | || || || | ||||| || ||||
Sbjct 16822 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAG 16763
Query 68969 GTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGA 69028
|| | ||| | || || ||| | || || ||| ||| || || || ||||
Sbjct 16762 TACCATGCTGCTTTGCAAGCTCAACAGATGAAGTCAAGGCAGCGTGGTAGATGGTCTCGA 16703
Query 69029 AAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAA 69088
| |||| | ||||| | || || || || |||||||| | | | | | |
Sbjct 16702 AGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGGGAGACGAAGAGCTAGGA 16643
Query 69089 ATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTT 69148
| |||| || | ||||| || |||| | | |||||||| || | ||| | |||
Sbjct 16642 ARACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-GCTCTTG 16584
Query 69149 CA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT-AAGAT-TTCGGACTA 69205
| || || |||| ||| || || || || || || || || || ||| | ||| || |
Sbjct 16583 CGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC--ACGA 16526
Query 69206 CTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATC--TATAACAAACAT 69263
| || | || || | || || |||| || | | ||||| | | || |
Sbjct 16525 CAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGT 16466
Query 69264 A--TTC--AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA---T 69316
| || || || | ||| || | |||||||| || ||||| | || |||| |
Sbjct 16465 AAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGG---TGCACAGT 16409
Query 69317 ATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTAC 69376
||| | |||||||| || ||||| | ||| || || || || | ||||||||
Sbjct 16408 ATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTAC 16349
Query 69377 TCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 69436
|||| ||| || || |||||||| || || || || | || || || | || | |
Sbjct 16348 TCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCT 16289
Query 69437 CGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTT- 69495
||| || || | ||||| | || || || ||||||| || ||| ||| |
Sbjct 16288 CGAGGATGGAGTACCAAAGCTTCTGGGCCTTGAT---GGTCTTGCGACCCTTGCCTTCTG 16232
Query 69496 --TCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGG 69551
|| || || | ||| | |||| || ||||| || || |||||||| | | || ||
Sbjct 16231 CCTCGTACTTCTCGTAAAGAGCC--TCAAATTCGTCACCGTAAACATCAGCAAGACCGGG 16174
Query 69552 ACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAG 69611
|| || || || ||||||| || ||| | ||| | || ||| || ||||| || ||
Sbjct 16173 GCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAG 16114
Query 69612 ATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtt 69671
||| |||||||| ||||| |||||||| | | | | ||| || ||||| ||
Sbjct 16113 ATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTT 16054
Query 69672 ttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCAT 69731
||| ||||| || ||||| | | ||||| |||||||| || || || ||||| |
Sbjct 16053 CTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAA 15994
Query 69732 GACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCT 69791
| || || || |||||||| ||||| || | |||||||| ||||| || | ||||
Sbjct 15993 AGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCG 15934
Query 69792 CAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC 69851
||||| |||| |||||| || || || || ||||| |||| ||| ||| ||| | ||
Sbjct 15933 GAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGC 15874
Query 69852 GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911
|| || | | | ||||| || ||||| || | || ||||| | ||||||
Sbjct 15873 ACGGATTCTGTGGACATTCAGACCGATGCCTCCAGCATTCTTGGAGATCATGGCACAAGT 15814
Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
|| | || || || ||||| || || || || || |||||| | | || ||
Sbjct 15813 CTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGA 15754
Query 69972 AGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031
||| | ||| ||| || || || ||| | || ||||| ||||| || || |
Sbjct 15753 AGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTA 15694
Query 70032 TTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCC 70091
|| || | || ||||||||| || ||||| || ||||| | ||||| ||
Sbjct 15693 CTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACC 15634
Query 70092 TATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127
| || || | ||| | ||| || || || |||||
Sbjct 15633 CACAGCCACTCTCATGATCATGTGTTGTGGACGTTC 15598
>seq172
Length=386049
Score = 84.2 bits (92), Expect = 3e-11
Identities = 173/257 (67%), Gaps = 3/257 (1%)
Strand=Plus/Plus
Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973
|| || |||||||| || ||| || || || ||||| || || | || |||| |
Sbjct 25535 TCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAGCGAGCCTCAGGTACC 25594
Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033
|| |||||| | |||| ||| | || || || || ||||| ||| || ||
Sbjct 25595 TGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATTCCGTCAGATGCAGCG 25654
Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCAG 40090
|| ||||| | || || | ||| ||| | |||||| | | | || ||||||
Sbjct 25655 AAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTGAGTCTGTTGTTCCAG 25714
Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150
|| | || ||| || || | ||| | |||||| || ||||| || || |||||||||||
Sbjct 25715 TCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAATGAAGCCTCTGCCTTC 25774
Query 40151 TTGTACATGTTCCATAT 40167
|||||||| | ||| ||
Sbjct 25775 TTGTACATCTGCCAGAT 25791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686904438129120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |