Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq487 268 1e-66 seq172 84.2 3e-11 >seq487 Length=114140 Score = 268 bits (296), Expect = 1e-66 Identities = 1138/1776 (64%), Gaps = 35/1776 (2%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || || |||||||| | ||| || | | ||||| || |||||||| ||||| |||||| Sbjct 17360 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 17301 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||| || ||| |||||||| || | ||| | ||||||| || Sbjct 17300 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 17241 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || || ||||||||||| || |||||||| || || | ||| || ||||| | | Sbjct 17240 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 17181 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | || | || ||||| | |||||| ||| |||||||| | |||| | Sbjct 17180 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATG 17121 Query 68614 CTCGT---ATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | |||||| ||||| || ||||||| || || ||||| || | ||| | Sbjct 17120 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 17061 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || | | || | | | | | | || ||||| | ||| ||||| ||| Sbjct 17060 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 17001 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | | || | || | ||| ||||| || ||||| || | | | || || || Sbjct 17000 GCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 16941 Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850 || |||||| || |||||||||||||| || || | ||||| || | |||||| Sbjct 16940 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 16881 Query 68851 TG-TGTTATGATTTTAT-CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908 || || | |||||| | ||| || || ||| ||||||||||| | ||| ||| | Sbjct 16880 TGCTGCT-TGATTTGTTGCTTCAAGGTGGC-CCAGTCCCAAAGATCGGTAGGTGTAACCT 16823 Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968 |||| | ||||||||| || ||| | || || || | ||||| || |||| Sbjct 16822 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAG 16763 Query 68969 GTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGA 69028 || | ||| | || || ||| | || || ||| ||| || || || |||| Sbjct 16762 TACCATGCTGCTTTGCAAGCTCAACAGATGAAGTCAAGGCAGCGTGGTAGATGGTCTCGA 16703 Query 69029 AAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAA 69088 | |||| | ||||| | || || || || |||||||| | | | | | | Sbjct 16702 AGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGGGAGACGAAGAGCTAGGA 16643 Query 69089 ATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTT 69148 | |||| || | ||||| || |||| | | |||||||| || | ||| | ||| Sbjct 16642 ARACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-GCTCTTG 16584 Query 69149 CA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT-AAGAT-TTCGGACTA 69205 | || || |||| ||| || || || || || || || || || ||| | ||| || | Sbjct 16583 CGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC--ACGA 16526 Query 69206 CTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATC--TATAACAAACAT 69263 | || | || || | || || |||| || | | ||||| | | || | Sbjct 16525 CAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGT 16466 Query 69264 A--TTC--AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA---T 69316 | || || || | ||| || | |||||||| || ||||| | || |||| | Sbjct 16465 AAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGG---TGCACAGT 16409 Query 69317 ATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTAC 69376 ||| | |||||||| || ||||| | ||| || || || || | |||||||| Sbjct 16408 ATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTAC 16349 Query 69377 TCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 69436 |||| ||| || || |||||||| || || || || | || || || | || | | Sbjct 16348 TCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCT 16289 Query 69437 CGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTT- 69495 ||| || || | ||||| | || || || ||||||| || ||| ||| | Sbjct 16288 CGAGGATGGAGTACCAAAGCTTCTGGGCCTTGAT---GGTCTTGCGACCCTTGCCTTCTG 16232 Query 69496 --TCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGG 69551 || || || | ||| | |||| || ||||| || || |||||||| | | || || Sbjct 16231 CCTCGTACTTCTCGTAAAGAGCC--TCAAATTCGTCACCGTAAACATCAGCAAGACCGGG 16174 Query 69552 ACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAG 69611 || || || || ||||||| || ||| | ||| | || ||| || ||||| || || Sbjct 16173 GCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAG 16114 Query 69612 ATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtt 69671 ||| |||||||| ||||| |||||||| | | | | ||| || ||||| || Sbjct 16113 ATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTT 16054 Query 69672 ttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCAT 69731 ||| ||||| || ||||| | | ||||| |||||||| || || || ||||| | Sbjct 16053 CTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAA 15994 Query 69732 GACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCT 69791 | || || || |||||||| ||||| || | |||||||| ||||| || | |||| Sbjct 15993 AGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCG 15934 Query 69792 CAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC 69851 ||||| |||| |||||| || || || || ||||| |||| ||| ||| ||| | || Sbjct 15933 GAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGC 15874 Query 69852 GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911 || || | | | ||||| || ||||| || | || ||||| | |||||| Sbjct 15873 ACGGATTCTGTGGACATTCAGACCGATGCCTCCAGCATTCTTGGAGATCATGGCACAAGT 15814 Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || | || || || ||||| || || || || || |||||| | | || || Sbjct 15813 CTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGA 15754 Query 69972 AGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 ||| | ||| ||| || || || ||| | || ||||| ||||| || || | Sbjct 15753 AGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTA 15694 Query 70032 TTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCC 70091 || || | || ||||||||| || ||||| || ||||| | ||||| || Sbjct 15693 CTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACC 15634 Query 70092 TATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 | || || | ||| | ||| || || || ||||| Sbjct 15633 CACAGCCACTCTCATGATCATGTGTTGTGGACGTTC 15598 >seq172 Length=386049 Score = 84.2 bits (92), Expect = 3e-11 Identities = 173/257 (67%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || || |||||||| || ||| || || || ||||| || || | || |||| | Sbjct 25535 TCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAGCGAGCCTCAGGTACC 25594 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || |||||| | |||| ||| | || || || || ||||| ||| || || Sbjct 25595 TGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATTCCGTCAGATGCAGCG 25654 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCAG 40090 || ||||| | || || | ||| ||| | |||||| | | | || |||||| Sbjct 25655 AAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTGAGTCTGTTGTTCCAG 25714 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | || ||| || || | ||| | |||||| || ||||| || || ||||||||||| Sbjct 25715 TCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAATGAAGCCTCTGCCTTC 25774 Query 40151 TTGTACATGTTCCATAT 40167 |||||||| | ||| || Sbjct 25775 TTGTACATCTGCCAGAT 25791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904438129120