Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq344 114 1e-20
seq487 95.1 1e-14
>seq344
Length=396322
Score = 114 bits (126), Expect = 1e-20
Identities = 167/235 (71%), Gaps = 1/235 (0%)
Strand=Plus/Plus
Query 27015 TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTA 27073
|||||| ||||| || | |||| |||| ||| | ||||| || || || || |||||
Sbjct 109865 TTATTGACCTCCACGAAGACGCAGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTA 109924
Query 27074 GTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133
|||||||| |||| | || || | ||| ||||| || |||| || | ||| || ||
Sbjct 109925 GTCGCTCAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTC 109984
Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGC 27193
|| || | |||||| ||||| ||||||| || | | | || | ||||| | |
Sbjct 109985 GGGTGGGATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGA 110044
Query 27194 TTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|||||||| ||||| |||| || || |||| ||| || || ||||| ||||||
Sbjct 110045 CTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATA 110099
>seq487
Length=114140
Score = 95.1 bits (104), Expect = 1e-14
Identities = 316/484 (65%), Gaps = 11/484 (2%)
Strand=Plus/Minus
Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661
||| || ||| |||| ||||| || | ||| || |||| ||||| |||||||| ||
Sbjct 16176 GGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAA 16117
Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTT--TTCTCTTCTGTACCC 131719
| ||| || | ||||| ||||| || ||||| | ||| ||| || || | ||
Sbjct 16116 GAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTC-CTCCTTT--CC 16060
Query 131720 ATAAtttttttCAAATTTAAA-AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACAC 131778
| || ||| | | || || || || | || || ||||| || || | || |
Sbjct 16059 GTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGAT 16000
Query 131779 TGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTA 131835
|| | || || ||||||| || || || | ||||| | | |||||||| |
Sbjct 15999 CGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAA 15940
Query 131836 TACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTA-GCTGC 131894
|| || | ||| || | | |||||||| ||| || || |||| |||||| ||| |
Sbjct 15939 AACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCT-C 15881
Query 131895 CATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTG 131954
|| |||| | |||| |||| || || || || || ||||| | | || ||||| | |
Sbjct 15880 CAGTGGCACGGATTCTGTGGACATTCAGACCGATGCCTCCAGCATTCTTGGAGATCATGG 15821
Query 131955 CGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAA 132014
| || | | ||||| | || ||||| || | |||||| | ||||||| || |
Sbjct 15820 CACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGA 15761
Query 132015 AGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTG 132074
|||| || || | ||| || ||||||||| | ||| | || || |||||||
Sbjct 15760 AGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTG 15701
Query 132075 TAAA 132078
||||
Sbjct 15700 TAAA 15697
Score = 89.7 bits (98), Expect = 4e-13
Identities = 167/245 (68%), Gaps = 3/245 (1%)
Strand=Plus/Minus
Query 130730 ACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTA 130789
|||||||| || | ||| | |||| || ||| || |||||||||||||| ||||
Sbjct 17045 ACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCAGCCAGGACACGTCGG 16986
Query 130790 ACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTA 130849
||| || ||| ||| | || || || | |||||| ||| | ||||| |||
Sbjct 16985 GAGTAGATATTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTA 16926
Query 130850 GTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTT 130909
| || || ||||| || || | | | ||||||||||||||| | |||||| |
Sbjct 16925 CTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGT 16866
Query 130910 CGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAAT 130969
||||||| |||| ||||| ||| ||||||| | || ||||||||||| ||
Sbjct 16865 TGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAAC---CTTCCACATATCGTAT 16809
Query 130970 TGTAG 130974
|| ||
Sbjct 16808 TGGAG 16804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424931769124896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |