Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq344 114 1e-20 seq487 95.1 1e-14 >seq344 Length=396322 Score = 114 bits (126), Expect = 1e-20 Identities = 167/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 27015 TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTA 27073 |||||| ||||| || | |||| |||| ||| | ||||| || || || || ||||| Sbjct 109865 TTATTGACCTCCACGAAGACGCAGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTA 109924 Query 27074 GTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133 |||||||| |||| | || || | ||| ||||| || |||| || | ||| || || Sbjct 109925 GTCGCTCAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTC 109984 Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGC 27193 || || | |||||| ||||| ||||||| || | | | || | ||||| | | Sbjct 109985 GGGTGGGATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGA 110044 Query 27194 TTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||||||| ||||| |||| || || |||| ||| || || ||||| |||||| Sbjct 110045 CTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATA 110099 >seq487 Length=114140 Score = 95.1 bits (104), Expect = 1e-14 Identities = 316/484 (65%), Gaps = 11/484 (2%) Strand=Plus/Minus Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661 ||| || ||| |||| ||||| || | ||| || |||| ||||| |||||||| || Sbjct 16176 GGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAA 16117 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTT--TTCTCTTCTGTACCC 131719 | ||| || | ||||| ||||| || ||||| | ||| ||| || || | || Sbjct 16116 GAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTC-CTCCTTT--CC 16060 Query 131720 ATAAtttttttCAAATTTAAA-AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACAC 131778 | || ||| | | || || || || | || || ||||| || || | || | Sbjct 16059 GTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGAT 16000 Query 131779 TGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTA 131835 || | || || ||||||| || || || | ||||| | | |||||||| | Sbjct 15999 CGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAA 15940 Query 131836 TACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTA-GCTGC 131894 || || | ||| || | | |||||||| ||| || || |||| |||||| ||| | Sbjct 15939 AACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCT-C 15881 Query 131895 CATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTG 131954 || |||| | |||| |||| || || || || || ||||| | | || ||||| | | Sbjct 15880 CAGTGGCACGGATTCTGTGGACATTCAGACCGATGCCTCCAGCATTCTTGGAGATCATGG 15821 Query 131955 CGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAA 132014 | || | | ||||| | || ||||| || | |||||| | ||||||| || | Sbjct 15820 CACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGA 15761 Query 132015 AGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTG 132074 |||| || || | ||| || ||||||||| | ||| | || || ||||||| Sbjct 15760 AGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTG 15701 Query 132075 TAAA 132078 |||| Sbjct 15700 TAAA 15697 Score = 89.7 bits (98), Expect = 4e-13 Identities = 167/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 130730 ACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTA 130789 |||||||| || | ||| | |||| || ||| || |||||||||||||| |||| Sbjct 17045 ACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCAGCCAGGACACGTCGG 16986 Query 130790 ACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTA 130849 ||| || ||| ||| | || || || | |||||| ||| | ||||| ||| Sbjct 16985 GAGTAGATATTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTA 16926 Query 130850 GTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTT 130909 | || || ||||| || || | | | ||||||||||||||| | |||||| | Sbjct 16925 CTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGT 16866 Query 130910 CGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAAT 130969 ||||||| |||| ||||| ||| ||||||| | || ||||||||||| || Sbjct 16865 TGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAAC---CTTCCACATATCGTAT 16809 Query 130970 TGTAG 130974 || || Sbjct 16808 TGGAG 16804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931769124896