Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq487 289 4e-73 seq172 145 1e-29 >seq487 Length=114140 Score = 289 bits (320), Expect = 4e-73 Identities = 1164/1807 (64%), Gaps = 37/1807 (2%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 ||||| |||||||| |||||||| || || ||||| | | |||||| | | Sbjct 17327 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 17268 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 | |||| ||| |||||| | |||| || |||||| ||| ||||| |||||| Sbjct 17267 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 17208 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCA-TCTTA-ATTTCCCAAACTGTGC 110540 || || | || ||||| | || || | | | | | || ||||| || || Sbjct 17207 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACGCTGGGAGATCTCCCAGACAGTCT 17150 Query 110541 GATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCT 110600 || ||| ||||||||| | || || | | || ||| ||||||||||| || | Sbjct 17149 TGTAAAGAGCCTTGATATCGGCAGGAATGTTAGGGACATTTTGGATGGAACCTCCATCGG 17090 Query 110601 TCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGA 110660 | || | | |||||| | | ||||||||||| || | || || || | | Sbjct 17089 CGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAACA 17030 Query 110661 GGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTG 110720 ||| || | || ||||| || ||| | || |||||| || | || Sbjct 17029 ACCAAGGGTTAACGACTTGGAATTCACCAGCCAGGACACGTCGGGAGTAGATATTGGATG 16970 Query 110721 TGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTG 110780 ||||||| || || || || || || | |||||| ||| ||| |||||||| | Sbjct 16969 TGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAG 16910 Query 110781 GTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCC 110840 | || | | | ||||||||||||||| | || |||||| ||| ||| | ||| Sbjct 16909 GAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCCC 16850 Query 110841 AGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGA 110898 |||| | || | | ||| | ||||||| |||| || | || ||| | ||||| || Sbjct 16849 AGTCCCAAA-GATCGGTAGGTGTAACCTTCC-ACATATCGTATTGGAGCTCTCCTTGTGA 16792 Query 110899 CGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGG-GCTTCAGCCAATTCA-CAGCTC 110956 || || ||||| || | || || || | ||| || |||| || | ||| ||| | Sbjct 16791 AGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTT-GCAAGCTCAACAGATG 16733 Query 110957 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 111016 || ||| | ||||| || ||||| || ||||| | || | | ||||| || Sbjct 16732 AAGTCAAGGCA-GCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCG 16674 Query 111017 TCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCAA 111075 || || |||| | || | | | | || ||||| |||||||| || ||||| | Sbjct 16673 GGAGACTCGAATGGG-AGACGAAGAGCTAGGAARACATCGGCGAGACCCTGGACACCAAC 16615 Query 111076 ACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAATT 111132 | ||||||||||||| || | ||| ||| || || ||| ||| || || | || Sbjct 16614 AGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGGTAGTAGTT 16558 Query 111133 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 111192 |||| |||| ||| | || || |||| || || || ||||| || | Sbjct 16557 GATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTG 16498 Query 111193 ATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252 | | || | ||| | | || ||||| || |||| || || | || ||||| || Sbjct 16497 AAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTT 16438 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312 |||||||| ||| || | ||| || | || ||||| || | ||||| || Sbjct 16437 ACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACGATCTCTGTGCAGAGATTGGAGCT 16378 Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 || || || | ||||| || |||||||| |||||| ||||||||||||||||| Sbjct 16377 GCGGATGGTACCAAGGTTCTTCTGATTACTCTTACGGTTGCAAGCATCCTTGTAGAGCAT 16318 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTG 111431 | | || | || ||||| || || | | ||| || | | ||||| | || | | || Sbjct 16317 GAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTT 16258 Query 111432 GTACAATGGCGTTGG--CCCGTCCCTCC-GCCTCGTACTTTGTGTAGAGGGCTTCAAACT 111488 | |||| ||| ||| | ||| | ||||||||||| ||| || || ||||| | Sbjct 16257 G----ATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCCTCAAATT 16202 Query 111489 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGAC 111548 | ||||| | || | ||||| || || || || || | || | |||| || Sbjct 16201 CGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTAC 16142 Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608 || | |||||| ||||||||||| || ||||||||||| || | | |||||||| | Sbjct 16141 CATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGC 16082 Query 111609 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 111668 | ||| | || || | || ||||| ||| | ||||||||||| | || ||| | Sbjct 16081 GAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAG 16022 Query 111669 CGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTA 111725 ||||||||||||| || |||| |||| || || || | ||| | || | | Sbjct 16021 CGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAA 15962 Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785 |||| | |||||| ||| || || || ||||| |||| |||||| | || | || | Sbjct 15961 CATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGT 15902 Query 111786 TTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 111845 |||| || ||| || | | |||| | | |||| | || || || || | Sbjct 15901 TTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATGCCTC 15842 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 |||| ||| ||||| ||||| | | ||||| | || ||||||| ||| || Sbjct 15841 CAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGT 15782 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 ||||||| || |||| | |||||| || | || | | |||||| || || | Sbjct 15781 CCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAA 15722 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAA 112023 |||||||||| | ||||| || | | |||| ||||||| | ||||||||| | Sbjct 15721 AGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGAT 15664 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || ||||| || |||||||| || || | || || | ||||| ||||| ||||| Sbjct 15663 AGCACTCTCAATATCATCCCCGTGAATACCCACAGCCACTCTCATGATCATGTGTTGTGG 15604 Query 112084 GGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGAC 112142 ||| | |||| ||||| || |||| || | || ||||||| || |||| | Sbjct 15603 ACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGATC-TCTCAAGAGTCTTGAATC 15545 Query 112143 CAAAGTA 112149 ||||||| Sbjct 15544 CAAAGTA 15538 >seq172 Length=386049 Score = 145 bits (160), Expect = 1e-29 Identities = 304/448 (68%), Gaps = 4/448 (1%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| |||| |||||||| |||||||||||||| || ||||| ||||| ||||| Sbjct 24900 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATG 24959 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAA-ATGGGTGGCACCCCAACTTGTTTGAGGAGACG 122489 ||||| ||||| || | || || | | | || | | ||| ||||| Sbjct 24960 AAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG-GAGCAGACG 25018 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 ||| | || |||||||||| | |||| ||| |||||| |||| || ||| Sbjct 25019 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 25078 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 || || || || | |||| ||| ||| |||||||| ||||| | | | | | || Sbjct 25079 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTTG 25138 Query 122610 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAACTCCT 122668 || | || | | || | || ||| ||| | | || |||||| || Sbjct 25139 GACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGAACAAGAGGCA-GGCAAAGTCGG 25197 Query 122669 GGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGAC 122728 ||||||||| || || ||||| || || || || |||||| ||||||||||| |||| Sbjct 25198 TGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGAC 25257 Query 122729 CCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 122788 | |||||||||||||| | |||| | |||||| |||||||||||||||||||| ||| Sbjct 25258 CACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAG 25317 Query 122789 ACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 ||||| |||| || || | ||||| Sbjct 25318 CGGCAAAGGCAACGAGACGCTGAGCGAA 25345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028011996800