Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq487 289 4e-73
seq172 145 1e-29
>seq487
Length=114140
Score = 289 bits (320), Expect = 4e-73
Identities = 1164/1807 (64%), Gaps = 37/1807 (2%)
Strand=Plus/Minus
Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422
||||| |||||||| |||||||| || || ||||| | | |||||| | |
Sbjct 17327 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 17268
Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482
| |||| ||| |||||| | |||| || |||||| ||| ||||| ||||||
Sbjct 17267 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 17208
Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCA-TCTTA-ATTTCCCAAACTGTGC 110540
|| || | || ||||| | || || | | | | | || ||||| || ||
Sbjct 17207 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACGCTGGGAGATCTCCCAGACAGTCT 17150
Query 110541 GATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCT 110600
|| ||| ||||||||| | || || | | || ||| ||||||||||| || |
Sbjct 17149 TGTAAAGAGCCTTGATATCGGCAGGAATGTTAGGGACATTTTGGATGGAACCTCCATCGG 17090
Query 110601 TCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGA 110660
| || | | |||||| | | ||||||||||| || | || || || | |
Sbjct 17089 CGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAACA 17030
Query 110661 GGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTG 110720
||| || | || ||||| || ||| | || |||||| || | ||
Sbjct 17029 ACCAAGGGTTAACGACTTGGAATTCACCAGCCAGGACACGTCGGGAGTAGATATTGGATG 16970
Query 110721 TGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTG 110780
||||||| || || || || || || | |||||| ||| ||| |||||||| |
Sbjct 16969 TGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAG 16910
Query 110781 GTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCC 110840
| || | | | ||||||||||||||| | || |||||| ||| ||| | |||
Sbjct 16909 GAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCCC 16850
Query 110841 AGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGA 110898
|||| | || | | ||| | ||||||| |||| || | || ||| | ||||| ||
Sbjct 16849 AGTCCCAAA-GATCGGTAGGTGTAACCTTCC-ACATATCGTATTGGAGCTCTCCTTGTGA 16792
Query 110899 CGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGG-GCTTCAGCCAATTCA-CAGCTC 110956
|| || ||||| || | || || || | ||| || |||| || | ||| ||| |
Sbjct 16791 AGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTT-GCAAGCTCAACAGATG 16733
Query 110957 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 111016
|| ||| | ||||| || ||||| || ||||| | || | | ||||| ||
Sbjct 16732 AAGTCAAGGCA-GCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCG 16674
Query 111017 TCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCAA 111075
|| || |||| | || | | | | || ||||| |||||||| || ||||| |
Sbjct 16673 GGAGACTCGAATGGG-AGACGAAGAGCTAGGAARACATCGGCGAGACCCTGGACACCAAC 16615
Query 111076 ACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAATT 111132
| ||||||||||||| || | ||| ||| || || ||| ||| || || | ||
Sbjct 16614 AGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGGTAGTAGTT 16558
Query 111133 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 111192
|||| |||| ||| | || || |||| || || || ||||| || |
Sbjct 16557 GATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTG 16498
Query 111193 ATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252
| | || | ||| | | || ||||| || |||| || || | || ||||| ||
Sbjct 16497 AAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTT 16438
Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312
|||||||| ||| || | ||| || | || ||||| || | ||||| ||
Sbjct 16437 ACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACGATCTCTGTGCAGAGATTGGAGCT 16378
Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372
|| || || | ||||| || |||||||| |||||| |||||||||||||||||
Sbjct 16377 GCGGATGGTACCAAGGTTCTTCTGATTACTCTTACGGTTGCAAGCATCCTTGTAGAGCAT 16318
Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTG 111431
| | || | || ||||| || || | | ||| || | | ||||| | || | | ||
Sbjct 16317 GAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTT 16258
Query 111432 GTACAATGGCGTTGG--CCCGTCCCTCC-GCCTCGTACTTTGTGTAGAGGGCTTCAAACT 111488
| |||| ||| ||| | ||| | ||||||||||| ||| || || ||||| |
Sbjct 16257 G----ATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCCTCAAATT 16202
Query 111489 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGAC 111548
| ||||| | || | ||||| || || || || || | || | |||| ||
Sbjct 16201 CGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTAC 16142
Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608
|| | |||||| ||||||||||| || ||||||||||| || | | |||||||| |
Sbjct 16141 CATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGC 16082
Query 111609 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 111668
| ||| | || || | || ||||| ||| | ||||||||||| | || ||| |
Sbjct 16081 GAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAG 16022
Query 111669 CGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTA 111725
||||||||||||| || |||| |||| || || || | ||| | || | |
Sbjct 16021 CGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAA 15962
Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785
|||| | |||||| ||| || || || ||||| |||| |||||| | || | || |
Sbjct 15961 CATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGT 15902
Query 111786 TTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 111845
|||| || ||| || | | |||| | | |||| | || || || || |
Sbjct 15901 TTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATGCCTC 15842
Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905
|||| ||| ||||| ||||| | | ||||| | || ||||||| ||| ||
Sbjct 15841 CAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGT 15782
Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965
||||||| || |||| | |||||| || | || | | |||||| || || |
Sbjct 15781 CCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAA 15722
Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAA 112023
|||||||||| | ||||| || | | |||| ||||||| | ||||||||| |
Sbjct 15721 AGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGAT 15664
Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083
|| ||||| || |||||||| || || | || || | ||||| ||||| |||||
Sbjct 15663 AGCACTCTCAATATCATCCCCGTGAATACCCACAGCCACTCTCATGATCATGTGTTGTGG 15604
Query 112084 GGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGAC 112142
||| | |||| ||||| || |||| || | || ||||||| || |||| |
Sbjct 15603 ACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGATC-TCTCAAGAGTCTTGAATC 15545
Query 112143 CAAAGTA 112149
|||||||
Sbjct 15544 CAAAGTA 15538
>seq172
Length=386049
Score = 145 bits (160), Expect = 1e-29
Identities = 304/448 (68%), Gaps = 4/448 (1%)
Strand=Plus/Plus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
||||| |||| |||||||| |||||||||||||| || ||||| ||||| |||||
Sbjct 24900 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATG 24959
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAA-ATGGGTGGCACCCCAACTTGTTTGAGGAGACG 122489
||||| ||||| || | || || | | | || | | ||| |||||
Sbjct 24960 AAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG-GAGCAGACG 25018
Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549
||| | || |||||||||| | |||| ||| |||||| |||| || |||
Sbjct 25019 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 25078
Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609
|| || || || | |||| ||| ||| |||||||| ||||| | | | | | ||
Sbjct 25079 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTTG 25138
Query 122610 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAACTCCT 122668
|| | || | | || | || ||| ||| | | || |||||| ||
Sbjct 25139 GACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGAACAAGAGGCA-GGCAAAGTCGG 25197
Query 122669 GGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGAC 122728
||||||||| || || ||||| || || || || |||||| ||||||||||| ||||
Sbjct 25198 TGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGAC 25257
Query 122729 CCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 122788
| |||||||||||||| | |||| | |||||| |||||||||||||||||||| |||
Sbjct 25258 CACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAG 25317
Query 122789 ACGCAAACGCAAAAAGGCGTTCGGCGAA 122816
||||| |||| || || | |||||
Sbjct 25318 CGGCAAAGGCAACGAGACGCTGAGCGAA 25345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628028011996800
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