Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq487 363 2e-95
seq172 156 5e-33
>seq487
Length=114140
Score = 363 bits (402), Expect = 2e-95
Identities = 982/1470 (67%), Gaps = 53/1470 (4%)
Strand=Plus/Plus
Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTCTTGAT 104214
|| ||||| |||| || ||||||| || | || |||| || ||||| || | |||
Sbjct 15538 TACTTTGGATTCAAGACTCTTGAGA-GATCATACCTTCTCCGTCTCGAGGG---CAAGAT 15593
Query 104215 GGA--AACC-CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271
| ||| ||||| ||||| ||||| | ||||| | |||||||| ||||| || ||
Sbjct 15594 TGCCGAACGTCCACAACACATGATCATGAGAGTGGCTGTGGGTATTCACGGGGATGATAT 15653
Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACA 104329
||| || | ||||||||| | ||||||| |||| | | || ||||| |
Sbjct 15654 TGAGAGTGCTATCGAGACATACAATTTGATGTCCAGCAAGTACTTTACA--CACGCGTCT 15711
Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389
||||||||||| || || |||||| | | ||| | || |||||| | |||| |
Sbjct 15712 CCAACCCTCTTTGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGAC 15771
Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 104449
| ||||||||| ||| ||||||| || | ||||| | | ||||| |||||
Sbjct 15772 ATGAAGGAGGACAGTATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGATCTCC 15831
Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509
||| ||||| || || || || | |||| | | |||| | | || |||
Sbjct 15832 AAGAATGCTGGAGGCATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTACATT 15891
Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569
|| ||||| || | || | |||||| |||| ||||| || || || ||| ||||
Sbjct 15892 GCTGGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACA 15951
Query 104570 GCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAG 104626
|| | ||||| | || | ||| | || || || |||| |||| || |||
Sbjct 15952 GCCAGATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAG 16011
Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686
||||||||||| ||| || | ||||||||||| | || ||||| || | |||||
Sbjct 16012 CCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAA 16071
Query 104687 G--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744
| |||| | ||||||||||||| |||||| |||||||||||||||||||||||| | |
Sbjct 16072 GTTCGCGCT--CGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTG 16129
Query 104745 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATG 104804
||||| ||| ||| | ||| | || | || || || || || ||||| | ||||
Sbjct 16130 TTGAGAAGAATGGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATG 16189
Query 104805 CCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTG 104864
||||| || ||||| || |||||| |||||||||| |||||| | | | | |
Sbjct 16190 TTTACGGTGACGAATTTGAGGCTCTTTACGAGAAGTACGAGGCAGAAGG-CAAGGGTC-G 16247
Query 104865 C--GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921
| ||| | | || | || | | ||| | | || ||| || | ||||||||||| |
Sbjct 16248 CAAGACCAT-CAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCG 16306
Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981
| | || | |||||| ||||| || || || |||| ||||||||||| ||||| | |
Sbjct 16307 GAAACCCTTTCATGCTCTACAAGGATGCTTGCAACCGTAAGAGTAATCAGAAGAACCTTG 16366
Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGA 105039
|| ||| || ||||||||||| ||||| ||| | ||| ||| | || || ||
Sbjct 16367 GTACCATCCGCAGCTCCAATCTCTGCACAGAGATCGTTGAA--TACTGTGCACCTGACGA 16424
Query 105040 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA 105099
| ||||| |||||| | || || | |||||||| | || || | ||| | | |
Sbjct 16425 GGTCGCTGTTTGTAACTTGGCTTCTCTTGCTCTCCCAACTTACGT-CAACCA-AAATGAT 16482
Query 105100 GACA--TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAAC 105157
| || | || | | | || || ||||| || | |||| || ||| | |||
Sbjct 16483 GGCAGCTACGACTTTCAGAAGCTTCACGATGTCTGCCAGGTTGTCGTGAAGAACTTGAAC 16542
Query 105158 AGAGTTATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGA 105214
| | || || | || | ||||| ||| ||| || || || ||| | |
Sbjct 16543 AAGATCATCGACATCAACTACTACCCTGTTCCCGAG---GCACGCAAGAGCAATTTCCGT 16599
Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGC 105271
||| | || |||| | | ||||| ||||||||||| ||||| ||| | |||| ||| |
Sbjct 16600 CACAGACCTATTGCTGTTGGTGTCCAGGGTCTCGCCGATGTYTTCCTAGCTCTTCGTCTC 16659
Query 105272 CACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTAT 105331
| |||| || || ||| || || | |||| | || || |||||||| ||
Sbjct 16660 C---CATTCGAGTCTCCCGAGGCCAAACACCTCAACATCCAGATCTTCGAGACCATCTAC 16716
Query 105332 CACGCCGCTCTTGAGGCGA---GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 105388
||||| || ||||| | ||| ||| | ||| || ||||| | || || ||
Sbjct 16717 CACGCTGC-CTTGACTTCATCTGTT--GAGCTTGCAAAGCAGCATGGTACTTACGAGACA 16773
Query 105389 TTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC 105448
| || ||||| |||||||||||||| | ||| |||| ||||||| ||||||| | |||
Sbjct 16774 TACGAAGGTTCCCCAGCTTCACAAGGAGAGCTCCAATACGATATGT-GGAAGGTTACACC 16832
Query 105449 AAGC-TTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAA 105507
| | || | ||||||| | | ||| ||| |||||| || | |||||||||||
Sbjct 16833 TACCGATCTTTGGGACTGGGCCACCTTGAAGCAACAAATCAAGCAGCACGGTCTTCGTAA 16892
Query 105508 CAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 105567
|||| | ||| | ||||| |||||||| ||| ||| |||||| | || || ||
Sbjct 16893 CAGTTTGCTCGTTGCTCCTATGCCAACTGCCAGTACCAGTCAAATCCTTGGCTTCAACGA 16952
Query 105568 ATGCTTTGAACCCTACACGACGAACATCTA 105597
|| || || || ||||| | || |||||
Sbjct 16953 GTGTTTCGAGCCATACACATCCAATATCTA 16982
>seq172
Length=386049
Score = 156 bits (172), Expect = 5e-33
Identities = 311/456 (68%), Gaps = 20/456 (4%)
Strand=Plus/Minus
Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857
|| ||| |||| ||| | || ||||| ||||||||||||||||||||| ||||| |||
Sbjct 25345 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 25286
Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917
| |||| | ||| | |||||||| ||||| ||||||||||| |||||||||||||
Sbjct 25285 GCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 25226
Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTT-TTCAAATTATT 94976
|| ||||| |||||||| || |||||| || ||||| || ||| ||| |
Sbjct 25225 CTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGC-CTGCCTCTTGTTC-------T 25174
Query 94977 GCGTATTAAACCAACGACTGAG--ACTATTCATTCTA-----TTGTTAAGGAAGCCGTTG 95029
| || ||||| || | || | | || || | || ||| || || ||||
Sbjct 25173 CCCACTTGAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTG 25114
Query 95030 AGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTG 95089
|||| ||| ||| ||| | ||||| ||||| || ||||| |||| ||||| |||
Sbjct 25113 AGATCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTG 25054
Query 95090 AAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGC 95149
||| |||| ||||||| || ||||| | || | | || |||
Sbjct 25053 CTTTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCT--CCTCGCTCTCGGTAA 24996
Query 95150 CTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGG 95207
| || || || ||| || ||||| ||||||||||||||||| ||| | |||
Sbjct 24995 CGAGAAGTATTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCCCTTGCCGG 24936
Query 95208 GAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 95243
||||| ||||||||||| ||| | || | |||||
Sbjct 24935 AAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTA 24900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583257096293920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |