Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq487 363 2e-95 seq172 156 5e-33 >seq487 Length=114140 Score = 363 bits (402), Expect = 2e-95 Identities = 982/1470 (67%), Gaps = 53/1470 (4%) Strand=Plus/Plus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTCTTGAT 104214 || ||||| |||| || ||||||| || | || |||| || ||||| || | ||| Sbjct 15538 TACTTTGGATTCAAGACTCTTGAGA-GATCATACCTTCTCCGTCTCGAGGG---CAAGAT 15593 Query 104215 GGA--AACC-CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 | ||| ||||| ||||| ||||| | ||||| | |||||||| ||||| || || Sbjct 15594 TGCCGAACGTCCACAACACATGATCATGAGAGTGGCTGTGGGTATTCACGGGGATGATAT 15653 Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACA 104329 ||| || | ||||||||| | ||||||| |||| | | || ||||| | Sbjct 15654 TGAGAGTGCTATCGAGACATACAATTTGATGTCCAGCAAGTACTTTACA--CACGCGTCT 15711 Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389 ||||||||||| || || |||||| | | ||| | || |||||| | |||| | Sbjct 15712 CCAACCCTCTTTGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGAC 15771 Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 104449 | ||||||||| ||| ||||||| || | ||||| | | ||||| ||||| Sbjct 15772 ATGAAGGAGGACAGTATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGATCTCC 15831 Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509 ||| ||||| || || || || | |||| | | |||| | | || ||| Sbjct 15832 AAGAATGCTGGAGGCATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTACATT 15891 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 || ||||| || | || | |||||| |||| ||||| || || || ||| |||| Sbjct 15892 GCTGGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACA 15951 Query 104570 GCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 || | ||||| | || | ||| | || || || |||| |||| || ||| Sbjct 15952 GCCAGATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAG 16011 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686 ||||||||||| ||| || | ||||||||||| | || ||||| || | ||||| Sbjct 16012 CCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAA 16071 Query 104687 G--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744 | |||| | ||||||||||||| |||||| |||||||||||||||||||||||| | | Sbjct 16072 GTTCGCGCT--CGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTG 16129 Query 104745 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATG 104804 ||||| ||| ||| | ||| | || | || || || || || ||||| | |||| Sbjct 16130 TTGAGAAGAATGGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATG 16189 Query 104805 CCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTG 104864 ||||| || ||||| || |||||| |||||||||| |||||| | | | | | Sbjct 16190 TTTACGGTGACGAATTTGAGGCTCTTTACGAGAAGTACGAGGCAGAAGG-CAAGGGTC-G 16247 Query 104865 C--GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 | ||| | | || | || | | ||| | | || ||| || | ||||||||||| | Sbjct 16248 CAAGACCAT-CAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCG 16306 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 | | || | |||||| ||||| || || || |||| ||||||||||| ||||| | | Sbjct 16307 GAAACCCTTTCATGCTCTACAAGGATGCTTGCAACCGTAAGAGTAATCAGAAGAACCTTG 16366 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGA 105039 || ||| || ||||||||||| ||||| ||| | ||| ||| | || || || Sbjct 16367 GTACCATCCGCAGCTCCAATCTCTGCACAGAGATCGTTGAA--TACTGTGCACCTGACGA 16424 Query 105040 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA 105099 | ||||| |||||| | || || | |||||||| | || || | ||| | | | Sbjct 16425 GGTCGCTGTTTGTAACTTGGCTTCTCTTGCTCTCCCAACTTACGT-CAACCA-AAATGAT 16482 Query 105100 GACA--TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAAC 105157 | || | || | | | || || ||||| || | |||| || ||| | ||| Sbjct 16483 GGCAGCTACGACTTTCAGAAGCTTCACGATGTCTGCCAGGTTGTCGTGAAGAACTTGAAC 16542 Query 105158 AGAGTTATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGA 105214 | | || || | || | ||||| ||| ||| || || || ||| | | Sbjct 16543 AAGATCATCGACATCAACTACTACCCTGTTCCCGAG---GCACGCAAGAGCAATTTCCGT 16599 Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGC 105271 ||| | || |||| | | ||||| ||||||||||| ||||| ||| | |||| ||| | Sbjct 16600 CACAGACCTATTGCTGTTGGTGTCCAGGGTCTCGCCGATGTYTTCCTAGCTCTTCGTCTC 16659 Query 105272 CACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTAT 105331 | |||| || || ||| || || | |||| | || || |||||||| || Sbjct 16660 C---CATTCGAGTCTCCCGAGGCCAAACACCTCAACATCCAGATCTTCGAGACCATCTAC 16716 Query 105332 CACGCCGCTCTTGAGGCGA---GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 105388 ||||| || ||||| | ||| ||| | ||| || ||||| | || || || Sbjct 16717 CACGCTGC-CTTGACTTCATCTGTT--GAGCTTGCAAAGCAGCATGGTACTTACGAGACA 16773 Query 105389 TTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC 105448 | || ||||| |||||||||||||| | ||| |||| ||||||| ||||||| | ||| Sbjct 16774 TACGAAGGTTCCCCAGCTTCACAAGGAGAGCTCCAATACGATATGT-GGAAGGTTACACC 16832 Query 105449 AAGC-TTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAA 105507 | | || | ||||||| | | ||| ||| |||||| || | ||||||||||| Sbjct 16833 TACCGATCTTTGGGACTGGGCCACCTTGAAGCAACAAATCAAGCAGCACGGTCTTCGTAA 16892 Query 105508 CAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 105567 |||| | ||| | ||||| |||||||| ||| ||| |||||| | || || || Sbjct 16893 CAGTTTGCTCGTTGCTCCTATGCCAACTGCCAGTACCAGTCAAATCCTTGGCTTCAACGA 16952 Query 105568 ATGCTTTGAACCCTACACGACGAACATCTA 105597 || || || || ||||| | || ||||| Sbjct 16953 GTGTTTCGAGCCATACACATCCAATATCTA 16982 >seq172 Length=386049 Score = 156 bits (172), Expect = 5e-33 Identities = 311/456 (68%), Gaps = 20/456 (4%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||| |||| ||| | || ||||| ||||||||||||||||||||| ||||| ||| Sbjct 25345 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 25286 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 | |||| | ||| | |||||||| ||||| ||||||||||| ||||||||||||| Sbjct 25285 GCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 25226 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTT-TTCAAATTATT 94976 || ||||| |||||||| || |||||| || ||||| || ||| ||| | Sbjct 25225 CTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGC-CTGCCTCTTGTTC-------T 25174 Query 94977 GCGTATTAAACCAACGACTGAG--ACTATTCATTCTA-----TTGTTAAGGAAGCCGTTG 95029 | || ||||| || | || | | || || | || ||| || || |||| Sbjct 25173 CCCACTTGAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTG 25114 Query 95030 AGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTG 95089 |||| ||| ||| ||| | ||||| ||||| || ||||| |||| ||||| ||| Sbjct 25113 AGATCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTG 25054 Query 95090 AAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGC 95149 ||| |||| ||||||| || ||||| | || | | || ||| Sbjct 25053 CTTTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCT--CCTCGCTCTCGGTAA 24996 Query 95150 CTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGG 95207 | || || || ||| || ||||| ||||||||||||||||| ||| | ||| Sbjct 24995 CGAGAAGTATTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCCCTTGCCGG 24936 Query 95208 GAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 95243 ||||| ||||||||||| ||| | || | ||||| Sbjct 24935 AAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTA 24900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257096293920