Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq185 241 4e-58
seq344 178 4e-39
seq359 129 2e-24
seq248 114 4e-20
seq116 111 5e-19
seq98 89.7 2e-12
>seq185
Length=385050
Score = 241 bits (266), Expect = 4e-58
Identities = 500/740 (68%), Gaps = 22/740 (3%)
Strand=Plus/Plus
Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261
|||||||||||| | ||||| || || ||||| || | | | | | |||||||| |
Sbjct 60934 ATAGGAATCGATCTGGGTACCACCTACTCTTGCGTGGGTATCTTCAGAGATGATCGTATC 60993
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
||||| |||||||| || || || ||| | ||||| || || | ||| || || || ||
Sbjct 60994 GAAATTATTGCAAACGACCAGGGAAACCGCACAACACCTTCCTTCGTCGCCTTCACAGAT 61053
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
||||||||| |||| || ||| |||| || || |||| ||| || |||| || ||
Sbjct 61054 ACTGAGCGTTTGATCGGAGATGCTGCCAAGAACCAAGTTGCCATGAACCCAATCAACACT 61113
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435
|| || ||||| ||||| || ||||| | |||| | |||| || ||
Sbjct 61114 GTCTTCGATGCCAAGCGTCTGATTGGACGCAAGTACGCAGATGCTGAGG--TC----CAG 61167
Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT---AAACCAATT 349492
||||| | || || || || || |||||| || ||| ||| | || ||| |
Sbjct 61168 GCTGATATGAAGCACTTCCCCTTCACTGTTCTT------GACCGTGGTGGAAAGCCAGTC 61221
Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552
| |||||||| | || || || | || ||||| ||| || || || || || |||
Sbjct 61222 GTCGAGGTTGAGTTCAAGGGCGAGAAGAAGCAATTCACACCTGAGGAGATCTCTTCCATG 61281
Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612
| || || || |||| || | |||||| || || | || | ||| || | | ||
Sbjct 61282 ATCTTGGTCAAGATGAGAGAGACTGCTGAGGCTTACCTCGGAGGAACCGTCAACAACGCC 61341
Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672
|| ||||||||||||| || || | ||| |||||||| || ||||| ||||| ||
Sbjct 61342 GTCGTTACTGTACCAGCTTACTTCACTGACTCCCAGCGTCAAGCTACAAAGGATGCCGGT 61401
Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732
|| || || | |||||||| |||| || || || || ||||| || || |||||
Sbjct 61402 CTGATCGCCGGTCTCAATGTTCTCCGAATCATCAACGAGCCAACTGCCGCTGCCATTGCC 61461
Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792
|| || ||||| || | | ||| || ||| | || || || ||| | |||||
Sbjct 61462 TACGGTCTTGACAAGAAGGTTGAGGGTGAGCGTAATGTCCTCATCTTCGATCTTGGTGGA 61521
Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852
|| ||||| ||||| || || | || | || ||||| || ||||| || || | ||
Sbjct 61522 GGAACTTTCGATGTCTCTCTCTTGACTATCGAGGAGGGTATCTTTGAGGTCAAGTCTACC 61581
Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912
|| ||||| || || | ||||| || || || || |||||||| ||| || || ||
Sbjct 61582 GCCGGTGACACTCACTTGGGTGGTGAGGACTTCGACAATCGTCTTGTTAACCACTTCGTA 61641
Query 349913 AAAGAATTTAAGCGTCAAGC 349932
| || ||||| || |||||
Sbjct 61642 AGTGAGTTTAAACG-CAAGC 61660
>seq344
Length=396322
Score = 178 bits (196), Expect = 4e-39
Identities = 178/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| ||||||||||||||||| || || || ||||||||
Sbjct 110096 CATACCACCACGAAGGCGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATC 110155
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| || || || ||||| || | || |||||||| || || || | ||||| || ||
Sbjct 110156 AGACAAGGTACGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGG 110215
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || || |||||||| | |||||||| |||
Sbjct 110216 TGGGATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTC 110275
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || ||||| | |||||||||||| || || || || |||||||||||
Sbjct 110276 GACCTCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 110326
Score = 111 bits (122), Expect = 5e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || ||||||||||| || || || || |||||
Sbjct 110324 CATACCACCACGGAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATC 110383
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|||| || || ||||| || | || |||||||| || || || | ||||| || ||
Sbjct 110384 GGATAGGGTGCGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGG 110443
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || || || || || | || ||||| || || | ||| |||| |||
Sbjct 110444 AGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTC 110503
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||||| || || | ||||| || || || || || ||
Sbjct 110504 GACTTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 110542
Score = 109 bits (120), Expect = 2e-18
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||| ||||| | | || || ||||| ||||||||||| || || || || || ||
Sbjct 109871 ACCTCCACGAAGACGCAGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 109930
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| || || ||||| || | || || |||||||| || || | ||||| || || ||
Sbjct 109931 CAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGG 109990
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
|| || || |||||||| || || | || || || || || | ||||| | |||||
Sbjct 109991 GATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAAC 110050
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || |||| |||||||| || | || || || || ||||||||
Sbjct 110051 TTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 110098
Score = 100 bits (110), Expect = 9e-16
Identities = 151/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||| ||||| | | || || |||||||||||||| || || || || || |
Sbjct 110612 TTTGCATACCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGT 110671
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
|||| || | || || || || || || || || ||||| ||||| | ||| ||||| |
Sbjct 110672 AATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGT 110731
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
| || ||||| || || || || || || || ||| || ||||| || || | || ||
Sbjct 110732 CGGGGGGAATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACATTGTCGATAGTGTCCGAA 110790
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
| || || || || || | ||||| |||||
Sbjct 110791 GACTCGACCTCGAGAGTGATGGTCTTGCCGGT 110822
>seq359
Length=494912
Score = 129 bits (142), Expect = 2e-24
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|||||||| || || || || | ||||| ||||| || || || |||||||| |||||
Sbjct 437947 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 437888
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
| ||||||||| || || || ||||| || || ||||| || || | || ||||| |||
Sbjct 437887 AAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 437828
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728
|||| ||| || | || || || || |||| |||||||||||| || ||||| || ||
Sbjct 437827 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 437769
>seq248
Length=298758
Score = 114 bits (126), Expect = 4e-20
Identities = 177/253 (70%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 378194 CCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTT 378253
|||| | |||||| | || || | ||| || || || || ||||| | | ||| |
Sbjct 85451 CCATAACATCTTCCAGAGCCTTGACAAGACGACGTTGGATGTATCCAGTCTCAGCAGTCT 85510
Query 378254 TAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAG 378313
|||| |||||||| || ||||| | |||||| |||| ||||||||||| || || ||||
Sbjct 85511 TAACAGCAGTATCGATCAAACCTTCTCGACCAGCCATAGCATGGAAGAAGAACTCGGTAG 85570
Query 378314 GAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCAT 378373
| || || || | || | | || |||||| ||||| | | |||| || | |||||
Sbjct 85571 GTGTGAGACCTCGAAGATACGAGTTCTCAACGAATCCACGCGATTCTGGGGAGTAATCAT 85630
Query 378374 ATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAA 378433
||| || |||| ||||| || || | || || || | ||||| || ||||| || |
Sbjct 85631 CTTTGGTGAAATGCGGTAAGGTTCGGTACTTGAAGCCGAAAGGAATACGCTTTCCTTCGA 85690
Query 378434 CATTCTGTTGACC 378446
|| || |||||
Sbjct 85691 CAGATTGCTGACC 85703
>seq116
Length=121463
Score = 111 bits (122), Expect = 5e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||| ||||| | | || || ||||||||||| ||||| || || || || || || ||
Sbjct 20318 ACCTCCACGGAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 20377
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| || || |||||||| ||||| || || || ||||| || ||||| || || || ||
Sbjct 20378 GAGGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGG 20437
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||| || || || ||||| || || | || || ||||| || | ||| || | || ||
Sbjct 20438 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATAGTATCGGAAGACTCTAC 20497
Query 140690 TTCAAGTGTAACTGTCTTTCCGGT 140713
|| || |||| |||||| || ||
Sbjct 20498 CTCTAGGGTAATTGTCTTGCCCGT 20521
>seq98
Length=652022
Score = 89.7 bits (98), Expect = 2e-12
Identities = 124/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260
||| || || ||||| || || || || |||||||| | ||| |||||| | ||
Sbjct 363002 TATCGGTATTGATTTGGGCACCACCTACTCTTGTGTGGGTGTGATGCAAAAGGGCAAAGT 362943
Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320
||||| | | || |||||||| |||||| || || |||||||| |||||||||||
Sbjct 362942 CGAAATCCTCGTCAACGATCAAGGACACAGAATTACACCCTCATACGTAGCATTTACCGA 362883
Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAA 349374
|||||| || |||| || | ||||| || || || || || || |||||
Sbjct 362882 TGATGAGCGATTGGTTGGAGACGCCGCAAAGAACCAGGCCGCCGCAAACCCAAA 362829
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515244537587924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |