Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq185 241 4e-58 seq344 178 4e-39 seq359 129 2e-24 seq248 114 4e-20 seq116 111 5e-19 seq98 89.7 2e-12 >seq185 Length=385050 Score = 241 bits (266), Expect = 4e-58 Identities = 500/740 (68%), Gaps = 22/740 (3%) Strand=Plus/Plus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 |||||||||||| | ||||| || || ||||| || | | | | | |||||||| | Sbjct 60934 ATAGGAATCGATCTGGGTACCACCTACTCTTGCGTGGGTATCTTCAGAGATGATCGTATC 60993 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 ||||| |||||||| || || || ||| | ||||| || || | ||| || || || || Sbjct 60994 GAAATTATTGCAAACGACCAGGGAAACCGCACAACACCTTCCTTCGTCGCCTTCACAGAT 61053 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 ||||||||| |||| || ||| |||| || || |||| ||| || |||| || || Sbjct 61054 ACTGAGCGTTTGATCGGAGATGCTGCCAAGAACCAAGTTGCCATGAACCCAATCAACACT 61113 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || ||||| ||||| || ||||| | |||| | |||| || || Sbjct 61114 GTCTTCGATGCCAAGCGTCTGATTGGACGCAAGTACGCAGATGCTGAGG--TC----CAG 61167 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT---AAACCAATT 349492 ||||| | || || || || || |||||| || ||| ||| | || ||| | Sbjct 61168 GCTGATATGAAGCACTTCCCCTTCACTGTTCTT------GACCGTGGTGGAAAGCCAGTC 61221 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552 | |||||||| | || || || | || ||||| ||| || || || || || ||| Sbjct 61222 GTCGAGGTTGAGTTCAAGGGCGAGAAGAAGCAATTCACACCTGAGGAGATCTCTTCCATG 61281 Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612 | || || || |||| || | |||||| || || | || | ||| || | | || Sbjct 61282 ATCTTGGTCAAGATGAGAGAGACTGCTGAGGCTTACCTCGGAGGAACCGTCAACAACGCC 61341 Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 || ||||||||||||| || || | ||| |||||||| || ||||| ||||| || Sbjct 61342 GTCGTTACTGTACCAGCTTACTTCACTGACTCCCAGCGTCAAGCTACAAAGGATGCCGGT 61401 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 || || || | |||||||| |||| || || || || ||||| || || ||||| Sbjct 61402 CTGATCGCCGGTCTCAATGTTCTCCGAATCATCAACGAGCCAACTGCCGCTGCCATTGCC 61461 Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || ||||| || | | ||| || ||| | || || || ||| | ||||| Sbjct 61462 TACGGTCTTGACAAGAAGGTTGAGGGTGAGCGTAATGTCCTCATCTTCGATCTTGGTGGA 61521 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 || ||||| ||||| || || | || | || ||||| || ||||| || || | || Sbjct 61522 GGAACTTTCGATGTCTCTCTCTTGACTATCGAGGAGGGTATCTTTGAGGTCAAGTCTACC 61581 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 || ||||| || || | ||||| || || || || |||||||| ||| || || || Sbjct 61582 GCCGGTGACACTCACTTGGGTGGTGAGGACTTCGACAATCGTCTTGTTAACCACTTCGTA 61641 Query 349913 AAAGAATTTAAGCGTCAAGC 349932 | || ||||| || ||||| Sbjct 61642 AGTGAGTTTAAACG-CAAGC 61660 >seq344 Length=396322 Score = 178 bits (196), Expect = 4e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| ||||||||||||||||| || || || |||||||| Sbjct 110096 CATACCACCACGAAGGCGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATC 110155 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| || || || ||||| || | || |||||||| || || || | ||||| || || Sbjct 110156 AGACAAGGTACGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGG 110215 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || |||||||| | |||||||| ||| Sbjct 110216 TGGGATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTC 110275 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| | |||||||||||| || || || || ||||||||||| Sbjct 110276 GACCTCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 110326 Score = 111 bits (122), Expect = 5e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || ||||||||||| || || || || ||||| Sbjct 110324 CATACCACCACGGAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATC 110383 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 |||| || || ||||| || | || |||||||| || || || | ||||| || || Sbjct 110384 GGATAGGGTGCGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGG 110443 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || || || || || | || ||||| || || | ||| |||| ||| Sbjct 110444 AGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTC 110503 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| || || | ||||| || || || || || || Sbjct 110504 GACTTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 110542 Score = 109 bits (120), Expect = 2e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | | || || ||||| ||||||||||| || || || || || || Sbjct 109871 ACCTCCACGAAGACGCAGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 109930 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || ||||| || | || || |||||||| || || | ||||| || || || Sbjct 109931 CAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGG 109990 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || |||||||| || || | || || || || || | ||||| | ||||| Sbjct 109991 GATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAAC 110050 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || |||| |||||||| || | || || || || |||||||| Sbjct 110051 TTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 110098 Score = 100 bits (110), Expect = 9e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || |||||||||||||| || || || || || | Sbjct 110612 TTTGCATACCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGT 110671 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | || || || || || || || || ||||| ||||| | ||| ||||| | Sbjct 110672 AATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGT 110731 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || ||||| || || || || || || || ||| || ||||| || || | || || Sbjct 110732 CGGGGGGAATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACATTGTCGATAGTGTCCGAA 110790 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || || || || || | ||||| ||||| Sbjct 110791 GACTCGACCTCGAGAGTGATGGTCTTGCCGGT 110822 >seq359 Length=494912 Score = 129 bits (142), Expect = 2e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 |||||||| || || || || | ||||| ||||| || || || |||||||| ||||| Sbjct 437947 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 437888 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | ||||||||| || || || ||||| || || ||||| || || | || ||||| ||| Sbjct 437887 AAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 437828 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 |||| ||| || | || || || || |||| |||||||||||| || ||||| || || Sbjct 437827 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 437769 >seq248 Length=298758 Score = 114 bits (126), Expect = 4e-20 Identities = 177/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 378194 CCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTT 378253 |||| | |||||| | || || | ||| || || || || ||||| | | ||| | Sbjct 85451 CCATAACATCTTCCAGAGCCTTGACAAGACGACGTTGGATGTATCCAGTCTCAGCAGTCT 85510 Query 378254 TAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAG 378313 |||| |||||||| || ||||| | |||||| |||| ||||||||||| || || |||| Sbjct 85511 TAACAGCAGTATCGATCAAACCTTCTCGACCAGCCATAGCATGGAAGAAGAACTCGGTAG 85570 Query 378314 GAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCAT 378373 | || || || | || | | || |||||| ||||| | | |||| || | ||||| Sbjct 85571 GTGTGAGACCTCGAAGATACGAGTTCTCAACGAATCCACGCGATTCTGGGGAGTAATCAT 85630 Query 378374 ATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAA 378433 ||| || |||| ||||| || || | || || || | ||||| || ||||| || | Sbjct 85631 CTTTGGTGAAATGCGGTAAGGTTCGGTACTTGAAGCCGAAAGGAATACGCTTTCCTTCGA 85690 Query 378434 CATTCTGTTGACC 378446 || || ||||| Sbjct 85691 CAGATTGCTGACC 85703 >seq116 Length=121463 Score = 111 bits (122), Expect = 5e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | | || || ||||||||||| ||||| || || || || || || || Sbjct 20318 ACCTCCACGGAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 20377 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || |||||||| ||||| || || || ||||| || ||||| || || || || Sbjct 20378 GAGGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGG 20437 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || || ||||| || | ||| || | || || Sbjct 20438 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATAGTATCGGAAGACTCTAC 20497 Query 140690 TTCAAGTGTAACTGTCTTTCCGGT 140713 || || |||| |||||| || || Sbjct 20498 CTCTAGGGTAATTGTCTTGCCCGT 20521 >seq98 Length=652022 Score = 89.7 bits (98), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260 ||| || || ||||| || || || || |||||||| | ||| |||||| | || Sbjct 363002 TATCGGTATTGATTTGGGCACCACCTACTCTTGTGTGGGTGTGATGCAAAAGGGCAAAGT 362943 Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320 ||||| | | || |||||||| |||||| || || |||||||| ||||||||||| Sbjct 362942 CGAAATCCTCGTCAACGATCAAGGACACAGAATTACACCCTCATACGTAGCATTTACCGA 362883 Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAA 349374 |||||| || |||| || | ||||| || || || || || || ||||| Sbjct 362882 TGATGAGCGATTGGTTGGAGACGCCGCAAAGAACCAGGCCGCCGCAAACCCAAA 362829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515244537587924