Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq487 192 6e-44
seq113 114 1e-20
>seq487
Length=114140
Score = 192 bits (212), Expect = 6e-44
Identities = 469/705 (67%), Gaps = 18/705 (3%)
Strand=Plus/Plus
Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302
||||| ||| | || ||| | ||||||||||| ||||| | |||||||| || |
Sbjct 15667 GAGACATACAATTTGATGTCCAGCAAGTACTTTACACACGCGTCTCCAACCCTCTTTGCC 15726
Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362
|| || || || | || | || |||||| || | | |||||||| |||
Sbjct 15727 GCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGACATGAAGGAGGACAGT 15786
Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422
|||||||| || ||||| || |||||| |||||| ||||||||| | || ||
Sbjct 15787 ATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGATCTCCAAGAATGCTGGAGGC 15846
Query 53423 ATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480
|||||| | | | | | ||| ||||||| | || | || || || ||||
Sbjct 15847 ATCGGTCTGAATGTCCACAGAA--TCCGTGCCACTGGAGCTTACATTGCTGGCACAAACG 15904
Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540
| | || | || || || ||||||||||| || ||||||||||| ||| | || ||
Sbjct 15905 GGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACAGCCAGATATGTTG 15964
Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600
|||||||||| |||||| || | ||||| |||||||||||||| |||||||| |
Sbjct 15965 ACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAGCCATGGCACGCTG 16024
Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTG 53660
| | | ||||| || || || || ||| || || | || || | ||| || |
Sbjct 16025 ATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAAGTTCGCGCTCGCG 16084
Query 53661 ACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719
| || || ||| ||||| |||||||| || ||||||||| | || |||||| | |
Sbjct 16085 ATCTCTTCTAC-GCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAAGAATGGT 16143
Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779
||| ||||||||||| |||||||||||||| || | ||| |||||||| ||
Sbjct 16144 ACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACGGTGACGAA 16203
Query 53780 TTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTC 53833
||| | | | || || |||| | || |||| ||| |||| ||
Sbjct 16204 TTTGAGGCTCTTTACGAGAAGTACGAGGCAGAAGGCAAGGGTCGC------AAGACCATC 16257
Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893
||||| | || | ||| | | |||||| || || ||||| |||| || | |
Sbjct 16258 AAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCCTTTC 16317
Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
||| |||||||||| | |||| ||||| || |||||||||
Sbjct 16318 ATGCTCTACAAGGATGCTTGCAACCGTAAGAGTAATCAGAAGAAC 16362
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787
|||||| ||||| ||| || |||||||| | ||| | | || | ||| ||
Sbjct 17135 TCAAGGCTCTTTACAAGACTGTCTGGGAGATCTCCCAGCGTACCATCGTTCAGATGGCTG 17194
Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847
||||||||||||| | ||||||||||||||| || |||||||| |||| || ||||
Sbjct 17195 CTGATCGTGGTGCCTTCATCGACCAGTCCCAATCGATGAACATCCACATGAAGGATCCAA 17254
Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907
| ||| |||| | | |||||||| || |||||| ||| || ||||| || |
Sbjct 17255 CTATGGGCAAGATCACGAGTATGCACTTCGCTGGCTGGAAGTTGGGTCTGAAGACCGGCA 17314
Query 55908 TGTACTATCTGCGGACC 55924
||||||| || || |||
Sbjct 17315 TGTACTACCTCCGTACC 17331
>seq113
Length=334785
Score = 114 bits (126), Expect = 1e-20
Identities = 185/266 (70%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||||||||||| || |||||||| |||| || | || | | |||||| |
Sbjct 19551 GTGAAAATGTAACGAGGACTAGCAGCATCACTGCCTCCCGATAGCCTAGAACCGAAAGAT 19610
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|||||||| |||||| ||||| |||||| | ||| | ||||| || |||| |||
Sbjct 19611 CCACTCGGTTCCAAGCAGTTCACGTTGTTTGAGCCGATGAAGTTCTGGGCCAGACCAACA 19670
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
|| || || | | | || || || ||||| || | ||||| | |||||| ||
Sbjct 19671 ATAGTCATGTGCATGGAAGTTTCGCCGTGATGATAAGCAGCGTGCTCGGACACGTATCCT 19730
Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544
|| |||| | || ||||||||| || || || ||||| ||| ||| | || |||
Sbjct 19731 GCTAGCTCGACAACTTTCATGTCTTTGGTGAGATTTCGCTTGAAGCAAGCAAACATAACC 19790
Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570
|| || |||| ||||| | |||||
Sbjct 19791 TTTCGTTGACCAGGCTTTAATCCATC 19816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547212525178400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |