Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq487 187 3e-42
seq344 161 1e-34
seq116 145 9e-30
seq359 131 2e-25
seq172 131 2e-25
>seq487
Length=114140
Score = 187 bits (206), Expect = 3e-42
Identities = 557/849 (66%), Gaps = 19/849 (2%)
Strand=Plus/Minus
Query 80905 AGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTTCC 80961
|| || |||| || || || || ||||| |||| || | ||| || ||||| ||
Sbjct 16451 AGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCA-CAGTAT--TCAACGATCTCT 16395
Query 80962 GTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAA 81021
||||| | ||| || || ||||| ||||| ||||| || ||| |||||||
Sbjct 16394 GTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTACGGTTGCAA 16335
Query 81022 GCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCC 81081
|| ||||||||| |||| | ||| | ||||||||| || | || |||||||| || |
Sbjct 16334 GCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTAC 16275
Query 81082 CAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAA 81141
|||| || | ||||||| |||||| |||||||| ||| | ||||| |||||
Sbjct 16274 CAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCGTAA 16215
Query 81142 GCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATC 81201
| || || | | |||||| || |||| || | ||||||||||| |||||||||
Sbjct 16214 AGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATC 16155
Query 81202 AG-GTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGC 81260
|| || | || || ||||| ||| ||||||||| || || ||||| || ||
Sbjct 16154 AGTGTCCATGTACCATTC-TTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGC 16096
Query 81261 GGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGA 81318
| ||| || ||||| |||||| | ||||| | || ||||| || | || ||
Sbjct 16095 GTAGAAGAGATCGCG--AGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGG 16038
Query 81319 AAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---A 81375
|| || | || || || ||||||||||| || || | |||| | || ||| |
Sbjct 16037 AACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTA 15978
Query 81376 CGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATA 81435
|||||||||| || || | ||| || ||| || || || | |||||| | |||
Sbjct 15977 TTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATA 15918
Query 81436 CCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATT 81495
|| | || | ||||| || || | || | || |||| || | || ||
Sbjct 15917 CCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACA 15858
Query 81496 GAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAA 81555
||||||||||| || | ||| || ||| ||||| || | || || |||
Sbjct 15857 TTCAGACCGATGCCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAA 15798
Query 81556 ATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTT 81615
|| || ||||| || || | |||||||| | |||||| || || | | | ||||
Sbjct 15797 ATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTT--GTGCTT 15740
Query 81616 TT--TGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCA 81673
| || |||||| || || ||||| | |||||| | || || | | |||||||
Sbjct 15739 GTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGACATCA 15680
Query 81674 GGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCA 81733
| || || || | | | |||||| || ||||||||||| | ||| || | ||
Sbjct 15679 AATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCCACAGCCACTCTCA 15620
Query 81734 TAAACATGT 81742
| | |||||
Sbjct 15619 TGATCATGT 15611
>seq344
Length=396322
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || ||||| ||||| || || || ||||| || ||| |
Sbjct 110326 ATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 110267
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| || | ||| | || || |||||||||||||| || || || ||||||
Sbjct 110266 GATACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 110207
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || ||||| ||||| ||||| | ||||||| |||||| | | || |||||
Sbjct 110206 CAGAGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAAC 110147
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || ||||||||||| || | || ||||| |||||
Sbjct 110146 ATCCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGCCTTCGTGGTGG 110100
Score = 159 bits (176), Expect = 4e-34
Identities = 176/232 (76%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || || |||||||||||||| || |||||||| |
Sbjct 110098 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGTCGTCT 110039
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || | ||| | || || ||||| |||||||| || || || ||||||
Sbjct 110038 GACACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCGACCAG 109979
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||| | || ||||||||||||||||| | ||||||| || || | ||| ||||| ||
Sbjct 109978 CAGAGACTTATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGC-GACTACAA 109920
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
|||| ||||| || ||||| ||||| || |||||||||| || || |||
Sbjct 109919 CATCCAGAAGGAGTCTACTCTCCATCTGGTGCTGCGTCTTCGTGGAGGTCAA 109868
Score = 149 bits (164), Expect = 7e-31
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| ||||| |||||||| || ||||| || || || ||| |||| ||| |
Sbjct 110542 GTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGAC 110483
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || || || ||||||||||| || ||||| ||||||||| | || |||
Sbjct 110482 AATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAGAGACTCATT 110423
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| ||||| ||||| | ||||||| || |||||| | || || || |||| |||||
Sbjct 110422 TTCGCTGGAAAGCAGTTGGAGGATGGCCGCACCCTATCCGATTACAACATCCAGAAGGAG 110363
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||||| || | ||| | ||||| || |||||
Sbjct 110362 TCTACTCTCCACTTGGTCCTCCGTCTCCGTGGTGG 110328
Score = 149 bits (164), Expect = 7e-31
Identities = 156/205 (76%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487
||||||||||||| || ||||| ||||| ||||| || | || | ||| | |||
Sbjct 110824 TTACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAAGA 110765
Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547
|| || || ||||||||||| ||||| || |||||||||||| | || || ||||| |
Sbjct 110764 GCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCA 110705
Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607
|||| |||||||| | ||| || || | || || || |||| |||||||| |||||||
Sbjct 110704 AGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTC 110645
Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||| | |||||||| || ||
Sbjct 110644 ATCTCGTCCTCCGTCTTCGTGGCGG 110620
>seq116
Length=121463
Score = 145 bits (160), Expect = 9e-30
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| |||||||| ||||| || ||||| ||||| |||| || | || | ||| |
Sbjct 20521 ACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGATAACGTCAAGTCC 20462
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| ||||| || ||||| || || || || || || || |||
Sbjct 20461 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAG 20402
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|||||||| |||| |||||||| | ||||| || |||| ||||| || |||||||||
Sbjct 20401 CAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCAT 20342
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|||||| | ||||| || || ||
Sbjct 20341 CTAGTCCTCCGTCTCCGTGGAGG 20319
>seq359
Length=494912
Score = 131 bits (144), Expect = 2e-25
Identities = 138/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| ||||| || || ||||| ||||| ||||| || ||||| ||||| |||| ||
Sbjct 437768 CTTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGAT 437827
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
|| ||| | ||| | || || ||||||||||||||||| || || |||||||| ||| |
Sbjct 437828 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGCAACGTTT 437887
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || ||||| ||||| |||||||||| || || || | ||||| || | |||||
Sbjct 437888 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 437947
Query 27594 GG 27595
||
Sbjct 437948 GG 437949
>seq172
Length=386049
Score = 131 bits (144), Expect = 2e-25
Identities = 304/453 (67%), Gaps = 13/453 (3%)
Strand=Plus/Minus
Query 64713 TCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTC 64772
||||||||||| || |||||| ||| || || || ||||| || || |||||| ||
Sbjct 25340 TCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTC 25281
Query 64773 TATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGAT 64832
||| |||||| | || ||||| || |||||||||||||| | || || |||||||| ||
Sbjct 25280 TATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCAT 25221
Query 64833 CTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAA--- 64889
||| || ||||| || |||||| || ||||| | ||||| |||| | ||
Sbjct 25220 CTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTCCCACTTGAACCA 25161
Query 64890 --GGACAAACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAA 64947
| ||| | | || | | | || || | | | |||||| || || ||
Sbjct 25160 TCGTCCAAGCAAGCA---AGCAGTCCAA--GACGTTATTACCGAGGCTGTTGAGATCGAG 25106
Query 64948 AAGGAATTCATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATG 65007
| || ||| | |||| || ||||| ||| ||| |||||||| | || | | ||||
Sbjct 25105 CAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGATG 25046
Query 65008 AAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGT-TTGGTATTAAGCCCTA 65066
|| || || || || || || || ||||| |||| | ||| | | |||| || ||
Sbjct 25045 AAGCAATACATTGAGTTCGTCGCTGATCGTCTGC-TCCTCGCTCTCGGTAACGAGAAGTA 24987
Query 65067 CTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAA 65126
| || || | || ||||| |||| ||||||| ||| ||| | || ||||| ||
Sbjct 24986 TTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCCCTTGCCGGAAAGACCAA 24927
Query 65127 CTTTTTTGAAAAGAGGGTAGGTGATTACTCAAA 65159
||| || || ||| | || | || ||| ||||
Sbjct 24926 CTTCTTCGAGAAGCGTGTCGCCGACTAC-CAAA 24895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570306778528960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |