Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq487 187 3e-42 seq344 161 1e-34 seq116 145 9e-30 seq359 131 2e-25 seq172 131 2e-25 >seq487 Length=114140 Score = 187 bits (206), Expect = 3e-42 Identities = 557/849 (66%), Gaps = 19/849 (2%) Strand=Plus/Minus Query 80905 AGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTTCC 80961 || || |||| || || || || ||||| |||| || | ||| || ||||| || Sbjct 16451 AGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCA-CAGTAT--TCAACGATCTCT 16395 Query 80962 GTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAA 81021 ||||| | ||| || || ||||| ||||| ||||| || ||| ||||||| Sbjct 16394 GTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTACGGTTGCAA 16335 Query 81022 GCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCC 81081 || ||||||||| |||| | ||| | ||||||||| || | || |||||||| || | Sbjct 16334 GCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTAC 16275 Query 81082 CAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAA 81141 |||| || | ||||||| |||||| |||||||| ||| | ||||| ||||| Sbjct 16274 CAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCGTAA 16215 Query 81142 GCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATC 81201 | || || | | |||||| || |||| || | ||||||||||| ||||||||| Sbjct 16214 AGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATC 16155 Query 81202 AG-GTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGC 81260 || || | || || ||||| ||| ||||||||| || || ||||| || || Sbjct 16154 AGTGTCCATGTACCATTC-TTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGC 16096 Query 81261 GGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGA 81318 | ||| || ||||| |||||| | ||||| | || ||||| || | || || Sbjct 16095 GTAGAAGAGATCGCG--AGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGG 16038 Query 81319 AAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---A 81375 || || | || || || ||||||||||| || || | |||| | || ||| | Sbjct 16037 AACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTA 15978 Query 81376 CGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATA 81435 |||||||||| || || | ||| || ||| || || || | |||||| | ||| Sbjct 15977 TTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATA 15918 Query 81436 CCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATT 81495 || | || | ||||| || || | || | || |||| || | || || Sbjct 15917 CCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACA 15858 Query 81496 GAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAA 81555 ||||||||||| || | ||| || ||| ||||| || | || || ||| Sbjct 15857 TTCAGACCGATGCCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAA 15798 Query 81556 ATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTT 81615 || || ||||| || || | |||||||| | |||||| || || | | | |||| Sbjct 15797 ATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTT--GTGCTT 15740 Query 81616 TT--TGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCA 81673 | || |||||| || || ||||| | |||||| | || || | | ||||||| Sbjct 15739 GTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGACATCA 15680 Query 81674 GGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCA 81733 | || || || | | | |||||| || ||||||||||| | ||| || | || Sbjct 15679 AATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCCACAGCCACTCTCA 15620 Query 81734 TAAACATGT 81742 | | ||||| Sbjct 15619 TGATCATGT 15611 >seq344 Length=396322 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||| ||||| || || || ||||| || ||| | Sbjct 110326 ATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 110267 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||| | || || |||||||||||||| || || || |||||| Sbjct 110266 GATACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 110207 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||| ||||| ||||| | ||||||| |||||| | | || ||||| Sbjct 110206 CAGAGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAAC 110147 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||||||||| || | || ||||| ||||| Sbjct 110146 ATCCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGCCTTCGTGGTGG 110100 Score = 159 bits (176), Expect = 4e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || || |||||||||||||| || |||||||| | Sbjct 110098 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGTCGTCT 110039 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || ||||| |||||||| || || || |||||| Sbjct 110038 GACACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCGACCAG 109979 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||| | || ||||||||||||||||| | ||||||| || || | ||| ||||| || Sbjct 109978 CAGAGACTTATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGC-GACTACAA 109920 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| || ||||| ||||| || |||||||||| || || ||| Sbjct 109919 CATCCAGAAGGAGTCTACTCTCCATCTGGTGCTGCGTCTTCGTGGAGGTCAA 109868 Score = 149 bits (164), Expect = 7e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| ||||| |||||||| || ||||| || || || ||| |||| ||| | Sbjct 110542 GTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGAC 110483 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || || ||||||||||| || ||||| ||||||||| | || ||| Sbjct 110482 AATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAGAGACTCATT 110423 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||| ||||| | ||||||| || |||||| | || || || |||| ||||| Sbjct 110422 TTCGCTGGAAAGCAGTTGGAGGATGGCCGCACCCTATCCGATTACAACATCCAGAAGGAG 110363 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || | ||| | ||||| || ||||| Sbjct 110362 TCTACTCTCCACTTGGTCCTCCGTCTCCGTGGTGG 110328 Score = 149 bits (164), Expect = 7e-31 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||||||||| || ||||| ||||| ||||| || | || | ||| | ||| Sbjct 110824 TTACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAAGA 110765 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 || || || ||||||||||| ||||| || |||||||||||| | || || ||||| | Sbjct 110764 GCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCA 110705 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 |||| |||||||| | ||| || || | || || || |||| |||||||| ||||||| Sbjct 110704 AGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTC 110645 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||| | |||||||| || || Sbjct 110644 ATCTCGTCCTCCGTCTTCGTGGCGG 110620 >seq116 Length=121463 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| ||||| || ||||| ||||| |||| || | || | ||| | Sbjct 20521 ACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGATAACGTCAAGTCC 20462 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| ||||| || ||||| || || || || || || || ||| Sbjct 20461 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAG 20402 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 |||||||| |||| |||||||| | ||||| || |||| ||||| || ||||||||| Sbjct 20401 CAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCAT 20342 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 |||||| | ||||| || || || Sbjct 20341 CTAGTCCTCCGTCTCCGTGGAGG 20319 >seq359 Length=494912 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| ||||| || || ||||| ||||| ||||| || ||||| ||||| |||| || Sbjct 437768 CTTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGAT 437827 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| | ||| | || || ||||||||||||||||| || || |||||||| ||| | Sbjct 437828 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGCAACGTTT 437887 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||| ||||| |||||||||| || || || | ||||| || | ||||| Sbjct 437888 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 437947 Query 27594 GG 27595 || Sbjct 437948 GG 437949 >seq172 Length=386049 Score = 131 bits (144), Expect = 2e-25 Identities = 304/453 (67%), Gaps = 13/453 (3%) Strand=Plus/Minus Query 64713 TCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTC 64772 ||||||||||| || |||||| ||| || || || ||||| || || |||||| || Sbjct 25340 TCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTC 25281 Query 64773 TATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGAT 64832 ||| |||||| | || ||||| || |||||||||||||| | || || |||||||| || Sbjct 25280 TATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCAT 25221 Query 64833 CTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAA--- 64889 ||| || ||||| || |||||| || ||||| | ||||| |||| | || Sbjct 25220 CTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTCCCACTTGAACCA 25161 Query 64890 --GGACAAACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAA 64947 | ||| | | || | | | || || | | | |||||| || || || Sbjct 25160 TCGTCCAAGCAAGCA---AGCAGTCCAA--GACGTTATTACCGAGGCTGTTGAGATCGAG 25106 Query 64948 AAGGAATTCATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATG 65007 | || ||| | |||| || ||||| ||| ||| |||||||| | || | | |||| Sbjct 25105 CAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGATG 25046 Query 65008 AAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGT-TTGGTATTAAGCCCTA 65066 || || || || || || || || ||||| |||| | ||| | | |||| || || Sbjct 25045 AAGCAATACATTGAGTTCGTCGCTGATCGTCTGC-TCCTCGCTCTCGGTAACGAGAAGTA 24987 Query 65067 CTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAA 65126 | || || | || ||||| |||| ||||||| ||| ||| | || ||||| || Sbjct 24986 TTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCCCTTGCCGGAAAGACCAA 24927 Query 65127 CTTTTTTGAAAAGAGGGTAGGTGATTACTCAAA 65159 ||| || || ||| | || | || ||| |||| Sbjct 24926 CTTCTTCGAGAAGCGTGTCGCCGACTAC-CAAA 24895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306778528960