Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq344 109 5e-19 seq116 95.1 1e-14 seq359 93.3 4e-14 >seq344 Length=396322 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||||||||| ||| | || || || || || ||| | || Sbjct 110326 ATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 110267 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||| || || ||||| || || || |||||||| || Sbjct 110266 GATACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 110207 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || ||||| || | ||| | || ||||| ||| Sbjct 110206 CAGAGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAAC 110147 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| ||||| | || | || ||||| || Sbjct 110146 ATCCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGCCTTCGTGGTGGTAT 110097 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || ||||| || |||||| | || ||||| ||||| ||| | ||||| | || || Sbjct 110542 GTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGAC 110483 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || || |||||||| || ||||| || ||||| || ||| | | || Sbjct 110482 AATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAGAGACTCATT 110423 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | ||| || || || ||||| || | ||| | |||||||||||||| || |||||| Sbjct 110422 TTCGCTGGAAAGCAGTTGGAGGATGGCCGCACCCTATCCGATTACAACATCCAGAAGGAG 110363 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || | || ||||| | ||| | || ||||| || Sbjct 110362 TCTACTCTCCACTTGGTCCTCCGTCTCCGTGGTGGTAT 110325 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||||||| | || ||||| || || || | || ||| | || || | ||||| Sbjct 110822 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAAGAGC 110763 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || |||||||| || ||||| || ||||| || |||||||| || | ||| ||||| Sbjct 110762 AAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCAAG 110703 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| || || | || ||||||||||| || ||||| || || | ||| Sbjct 110702 CAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTCAT 110643 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || | ||| | || || || || Sbjct 110642 CTCGTCCTCCGTCTTCGTGGCGGTAT 110617 >seq116 Length=121463 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 26996 ATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGAT 27055 |||| | |||| || || |||||| | ||||| || || || || | ||||| | || Sbjct 20535 ATTTATCAAAAGTC--ACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTAT 20478 Query 27056 TGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTT 27115 || | ||||| || || || ||||| || ||||| || ||||| ||||| || | Sbjct 20477 CGATAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCT 20418 Query 27116 AATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAA 27175 || | ||||||||| ||| | ||||| | ||| | ||||| |||||||| || || Sbjct 20417 CATCTTCGCCGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAA 20358 Query 27176 GGAGTCGAC 27184 ||||||||| Sbjct 20357 GGAGTCGAC 20349 >seq359 Length=494912 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || |||||||| ||||| ||| | ||||| || || || || | ||||| ||||| Sbjct 437769 TTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGATT 437828 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || || || ||||| || || || || ||||| || || ||||| Sbjct 437829 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGCAACGTTTG 437888 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | ||| || || || | || || | || ||||||| ||||||||||||||| Sbjct 437889 ATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAAG 437948 Query 27177 G 27177 | Sbjct 437949 G 437949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915638268160