Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq344 167 5e-36 seq116 159 8e-34 seq359 125 2e-23 seq487 98.7 2e-15 >seq344 Length=396322 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || |||||||| ||||| || |||||||||||||| | | ||| Sbjct 110105 ACGAAGGCGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGT 110164 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| |||||| || ||||| || || | || ||||| || || | || Sbjct 110165 ACGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACC 110224 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || ||||| || || || ||||| ||| |||||||| Sbjct 110225 CTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACCTCGAG 110284 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || |||||||| || || | |||||| Sbjct 110285 TGTGATTGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 110326 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| ||||| ||||| || |||||||| ||||| | ||||| | ||||| Sbjct 110343 AGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGATAGGGTGCGGCCATCC 110402 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || ||||| || || | || ||||| ||||| | || |||||||| Sbjct 110403 TCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCT 110462 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||| || || ||| || ||||||||||| ||| Sbjct 110463 TGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTC 110522 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || || |||||||| || Sbjct 110523 TTGCCAGTAAGAGTCTTGAC 110542 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || |||||||| || || || |||||||| ||||||| || || Sbjct 110625 ACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGT 110684 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| |||||||| | || || ||||| || |||| || Sbjct 110685 GCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCC 110744 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| |||||||| || || || ||||| ||||| || || |||||||| Sbjct 110745 CTCCTTGTCTTGGATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAG 110804 Query 211073 AGTGATCGTCTTTCCCGT 211090 |||||| ||||| || || Sbjct 110805 AGTGATGGTCTTGCCGGT 110822 Score = 134 bits (148), Expect = 3e-26 Identities = 167/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAA 210948 || |||||| | || || || || ||||| ||||| || |||||||| || || | ||| Sbjct 109874 TCCACGAAGACGCAGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAA 109933 Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 | | | ||||| |||| |||||| || || || ||||| | || ||||| || || | Sbjct 109934 AG-TGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGGA 109992 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 || ||||| ||||||||||| || ||||| ||||| |||||||| ||||| | Sbjct 109993 TACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACTT 110052 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| || |||||||| || | |||||| || || | |||||| Sbjct 110053 CCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 110098 >seq116 Length=121463 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| || |||||||| ||||| || |||||||| || || | || Sbjct 20321 TCCACGGAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAG 20380 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | |||||||| || |||||||| |||||||| |||||||||||||| || |||| Sbjct 20381 GGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAAT 20440 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || ||||| ||||| || || || || ||||| Sbjct 20441 GCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATAGTATCGGAAGACTCTACCTC 20500 Query 211070 GAGAGTGATCGTCTTTCCCGTGA 211092 || || || ||||| ||||||| Sbjct 20501 TAGGGTAATTGTCTTGCCCGTGA 20523 >seq359 Length=494912 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||| ||||| || || | ||| || | ||||| || |||||||| || |||||||| Sbjct 437947 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 437888 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||||| ||||| || || | ||| ||||||||||||||||| || || || || Sbjct 437887 AAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 437828 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || || || ||| || |||||||| || || |||||||| |||||||| || || || Sbjct 437827 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 437769 >seq487 Length=114140 Score = 98.7 bits (108), Expect = 2e-15 Identities = 191/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| |||||| || || ||||| | ||||| ||||| ||||| ||||| || Sbjct 16367 CCAAGGTTCTTCTGATTACTCTTACGGTTGCAA---GCATCCTTGTAGAGCATGAAAGGG 16311 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 |||| ||| | ||| ||| |||| ||| | |||||||| |||||| || ||| Sbjct 16310 TTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGATGGTC 16251 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 || | || ||||| ||||||||| | ||| || |||| ||||| || || Sbjct 16250 TTGCGACCCTTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCCTCAAATTCGTCACCGTAA 16191 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 |||||| | |||||||| ||| |||||||| | || |||| ||| | | || Sbjct 16190 ACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCA 16131 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 || || ||||||||||| || | |||| | || ||||| Sbjct 16130 ACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAA 16090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159144455369420