Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq344 136 9e-27
seq116 127 5e-24
seq359 111 4e-19
seq309 86.0 1e-11
>seq344
Length=396322
Score = 136 bits (150), Expect = 9e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| || || ||||| ||||| || |||| |||||||| | | |||
Sbjct 110625 ACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGT 110684
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||||||||| | || || |||||||| ||||| ||
Sbjct 110685 GCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCC 110744
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||||||||| ||| ||| ||||| ||||| || | || || || |
Sbjct 110745 CTCCTTGTCTTGGATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAG 110804
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| |||||||| ||
Sbjct 110805 AGTGATGGTCTTGCCGGT 110822
Score = 134 bits (148), Expect = 3e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | ||||||||| || || || |||| |||||||||| | || | |||||
Sbjct 110343 AGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGATAGGGTGCGGCCATCC 110402
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| |||||||| || |||| || |||||||| || || || |||||||||
Sbjct 110403 TCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCT 110462
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| |||||||| || || | ||| || || | ||||| |||
Sbjct 110463 TGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTC 110522
Query 225682 TTGCCCGTCAAAGTTTT 225698
||||| || | ||| ||
Sbjct 110523 TTGCCAGTAAGAGTCTT 110539
>seq116
Length=121463
Score = 127 bits (140), Expect = 5e-24
Identities = 141/188 (75%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || ||||| || || || |||| ||||| |||| | || | ||||||
Sbjct 20334 AGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCT 20393
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || |||||||| || |||||||||||||| ||||| || ||||||||
Sbjct 20394 TCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCC 20453
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||| || || || | || || |||| || || |||
Sbjct 20454 TGGATCTTGGACTTGACGTTATCGATAGTATCGGAAGACTCTACCTCTAGGGTAATTGTC 20513
Query 225682 TTGCCCGT 225689
||||||||
Sbjct 20514 TTGCCCGT 20521
>seq359
Length=494912
Score = 111 bits (122), Expect = 4e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
||||| | ||||| |||| | ||||| ||||| || |||||||| |||||||||||
Sbjct 437947 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 437888
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| ||||| |||||||| || || || |||||||| |||||||| ||| ||| ||
Sbjct 437887 AAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 437828
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|| || || |||| || || || | || || ||||| || || | |||||| | |||
Sbjct 437827 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 437769
>seq309
Length=1076370
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||| ||||| |||||||||||||| || || |||||||| ||||| ||||||||
Sbjct 539724 GAAAATTTGTCCATCGGTAATAGAGATAACGTTGGTTGGGATATAGGCAGACACATCACC 539783
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574
|||| || || | | || | ||| || | |||||||||||
Sbjct 539784 ACCTTGGGTCTCAATGATGGGAAGGGCAGTCAAAGATCCACCACC 539828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192523438112552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |