Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq487 259 7e-64
>seq487
Length=114140
Score = 259 bits (286), Expect = 7e-64
Identities = 1041/1618 (64%), Gaps = 38/1618 (2%)
Strand=Plus/Minus
Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828
||||| ||| | || || ||||| |||| || || | | ||||| || ||||||||
Sbjct 17373 TTCTTGATCGACGGTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACAT 17314
Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888
|| || || ||||||| |||| || ||| ||||| || || | ||| | |
Sbjct 17313 GCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGT 17254
Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948
||||| || || || |||||||| || || |||||||| || || | ||||||
Sbjct 17253 TGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGC 17194
Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008
||||| | | ||||| || | || ||||| | ||| ||| ||| |||||
Sbjct 17193 AGCCATCTGAACGATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGAT 17134
Query 77009 ATCATCTGGAAGGTTTGT---ATTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065
||| | |||| ||| | |||||| |||||||| ||||| | || || |||||
Sbjct 17133 ATCGGCAGGAATGTTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTT 17074
Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125
|| | ||| ||| | | | || | | | | | | ||| ||||| |
Sbjct 17073 CATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGAC 17014
Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185
||| ||||| |||| || || | || | ||| ||||| || ||||| || | | |
Sbjct 17013 TTGGAATTCACCAGCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGGCTCGAAACA 16954
Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245
|| ||| || | |||||| ||| |||||||||||||| || || | |||||
Sbjct 16953 CTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACT 16894
Query 77246 ATTTCTGAGACCATG-TGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCT 77303
|| | ||||| || || | |||||| | ||| || | ||| |||||||||||
Sbjct 16893 GTTACGAAGACCGTGCTGCT-TGATTTGTTGCTTCAAGGTGGC-CCAGTCCCAAAGATCG 16836
Query 77304 GAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTA 77363
| |||| ||| | ||| | ||||||||| || ||| | ||| || || |
Sbjct 16835 GTAGGTGTAACCTTCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCG 16776
Query 77364 TATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422
||||| || |||| || | ||| || || || ||| | | ||| || |||
Sbjct 16775 TATGTCTCGTAAGTACCATGCTGCTTT-GCAAGCTCAACAGATGAAGTCAAGGCAGCGTG 16717
Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482
|| || || ||||| |||| | ||||| | || || || | || || ||
Sbjct 16716 GTAGATGGTCTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGGGAG 16657
Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCT 77542
| | | | | || |||| || | ||||| || |||| | |||||||||| || |
Sbjct 16656 ACGAAGAGCTAGGAARACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACG 16597
Query 77543 CTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAG 77602
|||| | || || |||| ||| || || || ||||| || || || || |
Sbjct 16596 GAAATTGCTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAA 16537
Query 77603 ATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATC--T 77660
|| | || || || | || || | || || |||| || | || ||||| |
Sbjct 16536 GTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATT 16477
Query 77661 ATAACAAACAT--GTTC--AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGC 77716
| || | ||| | ||| | ||| || | |||||||| || ||||| | ||
Sbjct 16476 TTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG- 16418
Query 77717 GTTGGCA-TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTT 77775
|| || |||| | ||||| || || ||||| | ||| || || || || |
Sbjct 16417 GTGCACAGTATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCT 16358
Query 77776 GTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAA 77835
|| || ||||| ||||| | ||||| || || || || || | ||||| ||
Sbjct 16357 TCTGATTACTCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGG 16298
Query 77836 TCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATC--- 77892
| || | |||| || || | ||| | | ||| | || || | ||| |
Sbjct 16297 TTTGCGCCTCGAGGATGGAGTACCAAA-GCTTCTGGGCCTTG--ATGGTCTTGCGACCCT 16241
Query 77893 -GCCTCTCTCTTTCATATTGA--GTATATAGCCGTTCAAATTCATCTCCCCAAACATCAT 77949
|||| ||| || || | ||| | |||| |||||||| || || ||||||||
Sbjct 16240 TGCCT-TCTGCCTCGTACTTCTCGTAAAGAGCC--TCAAATTCGTCACCGTAAACATCAG 16184
Query 77950 CCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTT 78009
| | || ||||| || || |||||||||| || ||| ||||| | || ||| || |
Sbjct 16183 CAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCT 16124
Query 78010 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCAT 78069
|||| |||||||| || ||||||||||| || ||||| || | | | ||| || |
Sbjct 16123 TCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCT 16064
Query 78070 TTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 78129
|||| |||||| ||||| || ||||| | | ||||| |||||||| || || |
Sbjct 16063 TTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGT 16004
Query 78130 ATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTAT 78189
| || || | | | ||||| || ||||| || ||||| || | ||||||||| ||||| |
Sbjct 16003 AGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGT 15944
Query 78190 TATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAAC 78249
| |||||| | ||| |||| ||||||||| || | || ||||| |||| ||| |||
Sbjct 15943 TGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAG 15884
Query 78250 TTCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGAT 78305
|||| | || || || | |||| || || || ||||| || |||| ||
Sbjct 15883 CTCCAGTGGCACGGATTCT----GTGGACATTCAGACCGATGCCTCCAGCATTCTTGGAG 15828
Query 78306 ATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGT 78363
|| | || ||| || | |||||||| ||||| || |||||||| ||| ||||||
Sbjct 15827 ATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGT 15770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694664388853120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |