Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq487 259 7e-64 >seq487 Length=114140 Score = 259 bits (286), Expect = 7e-64 Identities = 1041/1618 (64%), Gaps = 38/1618 (2%) Strand=Plus/Minus Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||| ||| | || || ||||| |||| || || | | ||||| || |||||||| Sbjct 17373 TTCTTGATCGACGGTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACAT 17314 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 || || || ||||||| |||| || ||| ||||| || || | ||| | | Sbjct 17313 GCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGT 17254 Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948 ||||| || || || |||||||| || || |||||||| || || | |||||| Sbjct 17253 TGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGC 17194 Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008 ||||| | | ||||| || | || ||||| | ||| ||| ||| ||||| Sbjct 17193 AGCCATCTGAACGATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGAT 17134 Query 77009 ATCATCTGGAAGGTTTGT---ATTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065 ||| | |||| ||| | |||||| |||||||| ||||| | || || ||||| Sbjct 17133 ATCGGCAGGAATGTTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTT 17074 Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125 || | ||| ||| | | | || | | | | | | ||| ||||| | Sbjct 17073 CATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGAC 17014 Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185 ||| ||||| |||| || || | || | ||| ||||| || ||||| || | | | Sbjct 17013 TTGGAATTCACCAGCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGGCTCGAAACA 16954 Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245 || ||| || | |||||| ||| |||||||||||||| || || | ||||| Sbjct 16953 CTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACT 16894 Query 77246 ATTTCTGAGACCATG-TGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCT 77303 || | ||||| || || | |||||| | ||| || | ||| ||||||||||| Sbjct 16893 GTTACGAAGACCGTGCTGCT-TGATTTGTTGCTTCAAGGTGGC-CCAGTCCCAAAGATCG 16836 Query 77304 GAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTA 77363 | |||| ||| | ||| | ||||||||| || ||| | ||| || || | Sbjct 16835 GTAGGTGTAACCTTCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCG 16776 Query 77364 TATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 ||||| || |||| || | ||| || || || ||| | | ||| || ||| Sbjct 16775 TATGTCTCGTAAGTACCATGCTGCTTT-GCAAGCTCAACAGATGAAGTCAAGGCAGCGTG 16717 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 || || || ||||| |||| | ||||| | || || || | || || || Sbjct 16716 GTAGATGGTCTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGGGAG 16657 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCT 77542 | | | | | || |||| || | ||||| || |||| | |||||||||| || | Sbjct 16656 ACGAAGAGCTAGGAARACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACG 16597 Query 77543 CTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAG 77602 |||| | || || |||| ||| || || || ||||| || || || || | Sbjct 16596 GAAATTGCTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAA 16537 Query 77603 ATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATC--T 77660 || | || || || | || || | || || |||| || | || ||||| | Sbjct 16536 GTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATT 16477 Query 77661 ATAACAAACAT--GTTC--AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGC 77716 | || | ||| | ||| | ||| || | |||||||| || ||||| | || Sbjct 16476 TTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG- 16418 Query 77717 GTTGGCA-TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTT 77775 || || |||| | ||||| || || ||||| | ||| || || || || | Sbjct 16417 GTGCACAGTATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCT 16358 Query 77776 GTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAA 77835 || || ||||| ||||| | ||||| || || || || || | ||||| || Sbjct 16357 TCTGATTACTCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGG 16298 Query 77836 TCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATC--- 77892 | || | |||| || || | ||| | | ||| | || || | ||| | Sbjct 16297 TTTGCGCCTCGAGGATGGAGTACCAAA-GCTTCTGGGCCTTG--ATGGTCTTGCGACCCT 16241 Query 77893 -GCCTCTCTCTTTCATATTGA--GTATATAGCCGTTCAAATTCATCTCCCCAAACATCAT 77949 |||| ||| || || | ||| | |||| |||||||| || || |||||||| Sbjct 16240 TGCCT-TCTGCCTCGTACTTCTCGTAAAGAGCC--TCAAATTCGTCACCGTAAACATCAG 16184 Query 77950 CCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTT 78009 | | || ||||| || || |||||||||| || ||| ||||| | || ||| || | Sbjct 16183 CAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCT 16124 Query 78010 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCAT 78069 |||| |||||||| || ||||||||||| || ||||| || | | | ||| || | Sbjct 16123 TCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCT 16064 Query 78070 TTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 78129 |||| |||||| ||||| || ||||| | | ||||| |||||||| || || | Sbjct 16063 TTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGT 16004 Query 78130 ATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTAT 78189 | || || | | | ||||| || ||||| || ||||| || | ||||||||| ||||| | Sbjct 16003 AGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGT 15944 Query 78190 TATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAAC 78249 | |||||| | ||| |||| ||||||||| || | || ||||| |||| ||| ||| Sbjct 15943 TGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAG 15884 Query 78250 TTCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGAT 78305 |||| | || || || | |||| || || || ||||| || |||| || Sbjct 15883 CTCCAGTGGCACGGATTCT----GTGGACATTCAGACCGATGCCTCCAGCATTCTTGGAG 15828 Query 78306 ATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGT 78363 || | || ||| || | |||||||| ||||| || |||||||| ||| |||||| Sbjct 15827 ATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGT 15770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664388853120