Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq487 251 1e-61 seq172 102 1e-16 >seq487 Length=114140 Score = 251 bits (278), Expect = 1e-61 Identities = 1037/1613 (64%), Gaps = 28/1613 (2%) Strand=Plus/Minus Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423 ||||| ||| | ||||| |||||||||| ||| || | | ||||| || |||||||| Sbjct 17373 TTCTTGATCGACGGTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACAT 17314 Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 || || || ||||||| |||| || ||| ||||| || || | ||| | | Sbjct 17313 GCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGT 17254 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 ||||| || || || |||||||| || || |||||||| || || | |||||| Sbjct 17253 TGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGC 17194 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603 ||||| | | ||||| || | || ||||| | ||| ||| ||| ||||| Sbjct 17193 AGCCATCTGAACGATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGAT 17134 Query 75604 ATCATCTGGAAGATTTGT---ATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660 ||| | |||| || | |||||| ||||| || ||||| | || || ||||| Sbjct 17133 ATCGGCAGGAATGTTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTT 17074 Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 || | ||| ||| | | ||| | | | | | | ||| ||||| | Sbjct 17073 CATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGAC 17014 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||| ||||| |||| || || | ||| | ||| ||||| || ||||| || | | | Sbjct 17013 TTGGAATTCACCAGCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGGCTCGAAACA 16954 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 || ||| || | |||||| || ||||| |||||||| || || | ||||| Sbjct 16953 CTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACT 16894 Query 75841 ATTTCTGAGACCATG-TGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCT 75898 || | ||||| || || | |||||| | ||| || | ||| ||||||||||| Sbjct 16893 GTTACGAAGACCGTGCTGCT-TGATTTGTTGCTTCAAGGTGGC-CCAGTCCCAAAGATCG 16836 Query 75899 GATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTA 75958 | ||| ||| | ||| | ||||||||| || ||| | ||| || || | Sbjct 16835 GTAGGTGTAACCTTCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCG 16776 Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCG-CAACTCGCCTCTAACGCACCGTA 76017 ||||| |||||||| || | || | || || || || | || || ||| ||| Sbjct 16775 TATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTG 16717 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 || || || ||||| |||| | || || | || || || || || || || Sbjct 16716 GTAGATGGTCTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGGGAG 16657 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCT 76137 | | | | | || |||| || || ||||| || |||| | |||||||||| || | Sbjct 16656 ACGAAGAGCTAGGAARACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACG 16597 Query 76138 CTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAG 76197 |||| | || || |||| |||||| || || || || || || || || | Sbjct 16596 GAAATTGCTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAA 16537 Query 76198 ATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC--T 76255 || | || || || | || || | || || |||| || | | ||||| | Sbjct 16536 GTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATT 16477 Query 76256 ATCACAAACATA--TTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGC 76311 | || || || ||||| | ||| || | |||||||| || ||||| | || Sbjct 16476 TTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGG 16417 Query 76312 ATTGGCA-TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTT 76370 | || |||| | ||||| ||||| ||||| | ||| || ||||| || | Sbjct 16416 -TGCACAGTATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCT 16358 Query 76371 GTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 || || ||||| ||| || | ||||| || || | || || |||| || || Sbjct 16357 TCTGATTACTCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGG 16298 Query 76431 TCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCT 76490 | || | |||| || || | ||| | | ||| | || || | ||| | || Sbjct 16297 TTTGCGCCTCGAGGATGGAGTACCAAA-GCTTCTGGGCCTTG--ATGGTCTTGCGACCCT 16241 Query 76491 TCTCTCTT---TCATA-TTGT-GTATATAACCGTTCAAATTCATCTCCCCAAACATCATC 76545 | || | || || || | ||| | | || |||||||| || || |||||||| | Sbjct 16240 TGCCTTCTGCCTCGTACTTCTCGTAAAGAGCC--TCAAATTCGTCACCGTAAACATCAGC 16183 Query 76546 CAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTT 76605 | ||| || || || || || ||||||| || ||| ||||| | || ||| || || Sbjct 16182 AAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTT 16123 Query 76606 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATT 76665 ||| |||||||| || ||||||||||| || ||||| || | | | ||| || || Sbjct 16122 CATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTT 16063 Query 76666 TCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATA 76725 ||| |||||| ||||| |||||||| | | ||||| |||||||| || || || Sbjct 16062 TCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTA 16003 Query 76726 TATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATT 76785 ||||| | | |||| || || ||||| || ||||| || | ||||||||| ||||| || Sbjct 16002 GATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTT 15943 Query 76786 ATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACT 76845 |||||| | ||| |||| ||| ||||| || | || ||||| |||| ||| ||| Sbjct 15942 GAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGC 15883 Query 76846 TCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAG 76905 |||| ||||| || | | | || || || ||||| || | || ||||| | Sbjct 15882 TCCAGTGGCACGGATTCTGTGGACATTCAGACCGATGCCTCCAGCATTCTTGGAGATCAT 15823 Query 76906 AGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGT 76958 ||||| || | || || || || || || ||||| || ||| |||||| Sbjct 15822 GGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGT 15770 >seq172 Length=386049 Score = 102 bits (112), Expect = 1e-16 Identities = 222/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Plus Query 46852 GTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATT 46911 || || |||||||| || ||| || | || | | || |||| ||||| || || Sbjct 25460 GTCTCGATAGCATTGAACAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATG 25519 Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACAT 46971 | ||| || | || || || ||||| || || || || || ||||| || || Sbjct 25520 AGAAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAG 25579 Query 46972 CTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT 47031 | || |||| | ||| |||||| | ||||| || | ||||| || || ||| Sbjct 25580 CGAGCCTCAGGTACCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATT 25639 Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091 || ||| ||||| || ||||| | || || | ||| ||| | |||||| | | Sbjct 25640 CCGTCAGATGCAGCGAAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTG 25699 Query 47092 AGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148 ||| || |||||||| | || ||| || || | ||| | |||||| || ||||||||| Sbjct 25700 AGTCTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAAT 25759 Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATAT 47180 || |||||||| || || ||||| | ||| || Sbjct 25760 GAAGCCTCTGCCTTCTTGTACATCTGCCAGAT 25791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712929872866560