Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq487 251 1e-61
seq172 102 1e-16
>seq487
Length=114140
Score = 251 bits (278), Expect = 1e-61
Identities = 1037/1613 (64%), Gaps = 28/1613 (2%)
Strand=Plus/Minus
Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423
||||| ||| | ||||| |||||||||| ||| || | | ||||| || ||||||||
Sbjct 17373 TTCTTGATCGACGGTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACAT 17314
Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483
|| || || ||||||| |||| || ||| ||||| || || | ||| | |
Sbjct 17313 GCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGT 17254
Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543
||||| || || || |||||||| || || |||||||| || || | ||||||
Sbjct 17253 TGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGC 17194
Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603
||||| | | ||||| || | || ||||| | ||| ||| ||| |||||
Sbjct 17193 AGCCATCTGAACGATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGAT 17134
Query 75604 ATCATCTGGAAGATTTGT---ATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660
||| | |||| || | |||||| ||||| || ||||| | || || |||||
Sbjct 17133 ATCGGCAGGAATGTTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTT 17074
Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720
|| | ||| ||| | | ||| | | | | | | ||| ||||| |
Sbjct 17073 CATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGAC 17014
Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780
||| ||||| |||| || || | ||| | ||| ||||| || ||||| || | | |
Sbjct 17013 TTGGAATTCACCAGCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGGCTCGAAACA 16954
Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840
|| ||| || | |||||| || ||||| |||||||| || || | |||||
Sbjct 16953 CTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACT 16894
Query 75841 ATTTCTGAGACCATG-TGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCT 75898
|| | ||||| || || | |||||| | ||| || | ||| |||||||||||
Sbjct 16893 GTTACGAAGACCGTGCTGCT-TGATTTGTTGCTTCAAGGTGGC-CCAGTCCCAAAGATCG 16836
Query 75899 GATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTA 75958
| ||| ||| | ||| | ||||||||| || ||| | ||| || || |
Sbjct 16835 GTAGGTGTAACCTTCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCG 16776
Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCG-CAACTCGCCTCTAACGCACCGTA 76017
||||| |||||||| || | || | || || || || | || || ||| |||
Sbjct 16775 TATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTG 16717
Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077
|| || || ||||| |||| | || || | || || || || || || ||
Sbjct 16716 GTAGATGGTCTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGGGAG 16657
Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCT 76137
| | | | | || |||| || || ||||| || |||| | |||||||||| || |
Sbjct 16656 ACGAAGAGCTAGGAARACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACG 16597
Query 76138 CTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAG 76197
|||| | || || |||| |||||| || || || || || || || || |
Sbjct 16596 GAAATTGCTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAA 16537
Query 76198 ATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC--T 76255
|| | || || || | || || | || || |||| || | | ||||| |
Sbjct 16536 GTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATT 16477
Query 76256 ATCACAAACATA--TTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGC 76311
| || || || ||||| | ||| || | |||||||| || ||||| | ||
Sbjct 16476 TTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGG 16417
Query 76312 ATTGGCA-TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTT 76370
| || |||| | ||||| ||||| ||||| | ||| || ||||| || |
Sbjct 16416 -TGCACAGTATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCT 16358
Query 76371 GTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430
|| || ||||| ||| || | ||||| || || | || || |||| || ||
Sbjct 16357 TCTGATTACTCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGG 16298
Query 76431 TCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCT 76490
| || | |||| || || | ||| | | ||| | || || | ||| | ||
Sbjct 16297 TTTGCGCCTCGAGGATGGAGTACCAAA-GCTTCTGGGCCTTG--ATGGTCTTGCGACCCT 16241
Query 76491 TCTCTCTT---TCATA-TTGT-GTATATAACCGTTCAAATTCATCTCCCCAAACATCATC 76545
| || | || || || | ||| | | || |||||||| || || |||||||| |
Sbjct 16240 TGCCTTCTGCCTCGTACTTCTCGTAAAGAGCC--TCAAATTCGTCACCGTAAACATCAGC 16183
Query 76546 CAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTT 76605
| ||| || || || || || ||||||| || ||| ||||| | || ||| || ||
Sbjct 16182 AAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTT 16123
Query 76606 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATT 76665
||| |||||||| || ||||||||||| || ||||| || | | | ||| || ||
Sbjct 16122 CATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTT 16063
Query 76666 TCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATA 76725
||| |||||| ||||| |||||||| | | ||||| |||||||| || || ||
Sbjct 16062 TCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTA 16003
Query 76726 TATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATT 76785
||||| | | |||| || || ||||| || ||||| || | ||||||||| ||||| ||
Sbjct 16002 GATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTT 15943
Query 76786 ATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACT 76845
|||||| | ||| |||| ||| ||||| || | || ||||| |||| ||| |||
Sbjct 15942 GAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGC 15883
Query 76846 TCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAG 76905
|||| ||||| || | | | || || || ||||| || | || ||||| |
Sbjct 15882 TCCAGTGGCACGGATTCTGTGGACATTCAGACCGATGCCTCCAGCATTCTTGGAGATCAT 15823
Query 76906 AGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGT 76958
||||| || | || || || || || || ||||| || ||| ||||||
Sbjct 15822 GGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGT 15770
>seq172
Length=386049
Score = 102 bits (112), Expect = 1e-16
Identities = 222/332 (67%), Gaps = 3/332 (1%)
Strand=Plus/Plus
Query 46852 GTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATT 46911
|| || |||||||| || ||| || | || | | || |||| ||||| || ||
Sbjct 25460 GTCTCGATAGCATTGAACAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATG 25519
Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACAT 46971
| ||| || | || || || ||||| || || || || || ||||| || ||
Sbjct 25520 AGAAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAG 25579
Query 46972 CTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT 47031
| || |||| | ||| |||||| | ||||| || | ||||| || || |||
Sbjct 25580 CGAGCCTCAGGTACCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATT 25639
Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091
|| ||| ||||| || ||||| | || || | ||| ||| | |||||| | |
Sbjct 25640 CCGTCAGATGCAGCGAAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTG 25699
Query 47092 AGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148
||| || |||||||| | || ||| || || | ||| | |||||| || |||||||||
Sbjct 25700 AGTCTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAAT 25759
Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATAT 47180
|| |||||||| || || ||||| | ||| ||
Sbjct 25760 GAAGCCTCTGCCTTCTTGTACATCTGCCAGAT 25791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712929872866560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |