Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq344 122 2e-22 seq116 104 5e-17 >seq344 Length=396322 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||||||||| || ||||||||||| ||| ||||| | ||||| Sbjct 109887 AGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCC 109946 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || || ||||| ||||||||||| | | ||| || ||||| || Sbjct 109947 TCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCC 110006 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | |||| || ||| ||||| ||||||||||| Sbjct 110007 TGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTC 110066 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | |||||| ||||||| |||||| Sbjct 110067 TTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 110098 Score = 118 bits (130), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || ||||||||||| || |||||||||||||||| || || | Sbjct 110336 GAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGATAGGGTGCG 110395 Query 151946 CCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || | ||||| || ||||| || || ||||||||||| | | ||| || Sbjct 110396 GCCATCCTCCAACTGCTTT--CCAGCGAAAATGAGTCTCTGCTGGTCGGGAGGGATGCCC 110453 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || |||||| | || | | | || || || ||||| ||| Sbjct 110454 TCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTCGACTTCGAGA 110513 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 || || || ||||| || |||||||| |||| Sbjct 110514 GTGATGGTCTTGCCAGTAAGAGTCTTGACGA 110544 Score = 102 bits (112), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||||||||||||||| || |||||||| ||||| | || || | ||||| Sbjct 110115 AGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATCC 110174 Query 151953 TCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || ||||| || || ||||||||||| | | ||| || ||||| | Sbjct 110175 TCCAACTGCTTT--CCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGT 110232 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || ||| ||||| | || | | || || || || || || || || | Sbjct 110233 CCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTG 110292 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || |||||||| ||||| | |||||| Sbjct 110293 TCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 110326 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| |||||||||||||| || || |||||||||||||| | | ||| | || || Sbjct 110634 GAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTC 110693 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || |||||||| | | ||||||||| | | || || ||||| || Sbjct 110694 CTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 110753 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || |||||| | || | |||| ||| ||| || || ||||| || || Sbjct 110754 TTGGATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGT 110813 Query 152072 TTTGCCCGT 152080 ||||| || Sbjct 110814 CTTGCCGGT 110822 >seq116 Length=121463 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| ||||||||||| ||||| || ||||||||||| |||| | || | Sbjct 20327 GAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACG 20386 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || ||||||||||| || | || ||||| | | || || || Sbjct 20387 GCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTC 20446 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | || ||| |||||| || || || Sbjct 20447 CTTGTCCTGGATCTTGGACTTGACGTTATCGATAGTATCGGAAGACTCTACCTCTAGGGT 20506 Query 152066 AATAGTTTTGCCCGTGA 152082 ||| || |||||||||| Sbjct 20507 AATTGTCTTGCCCGTGA 20523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153813290068868