Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq359 100 2e-16 seq344 91.5 1e-13 >seq359 Length=494912 Score = 100 bits (110), Expect = 2e-16 Identities = 137/186 (74%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||| |||||||| |||| ||||| | || | || || |||||||| || || || Sbjct 437949 CCTTTTGAATGTTGTAGTCGGAAAGAGTTCG-GC-CATCCTCGAGCTGCTTTCCAGCGAA 437892 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAAT 44263 ||||||||| ||||| || | || | || ||||| ||| ||||| ||| || | Sbjct 437891 GATCAAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATT 437832 Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 || | || || |||| ||| || ||||| | ||||| |||||||| ||||| || || Sbjct 437831 GT--CAATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTG 437774 Query 44324 ACGAAG 44329 |||||| Sbjct 437773 ACGAAG 437768 >seq344 Length=396322 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || |||||| || || || |||||| ||||||||||| ||| | ||| | || Sbjct 109886 CAGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATC 109945 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||| |||||| || ||||| || | | |||||| || | || | ||| ||||| || Sbjct 109946 CTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATC 110005 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 | ||||| ||| | | | || ||||| | || || || |||| ||||| || Sbjct 110006 CTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGT 110065 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| || | ||||| |||||||| ||||| Sbjct 110066 CTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 110098 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/201 (70%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||| |||||||||||||||| || ||| | || ||| Sbjct 110346 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGATAGGGTGCGGCCATCCTCC 110405 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || || || || | | |||||| || | ||| | || ||||| || Sbjct 110406 AACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGG 110465 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | ||||| |||| ||||| || || | || || |||| Sbjct 110466 ATCTTCGACTTGACATTGT--CGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCT 110523 Query 44307 TTCCCGTGAGGGTCTTCACGA 44327 | || || || ||||| |||| Sbjct 110524 TGCCAGTAAGAGTCTTGACGA 110544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || ||||| |||||||||||||| | ||| ||| |||| || Sbjct 110638 ACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCG 110697 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||||||||||||||| || | || | || ||||| || Sbjct 110698 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGG 110757 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || ||||| | || || ||||| | || || |||| Sbjct 110758 ATCTTGCTCTTGACATTGT--CGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCT 110815 Query 44307 TTCCCGT 44313 | || || Sbjct 110816 TGCCGGT 110822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988171209436